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GeoJSON files for ceramic kilns of the ancient world, no chronological/spatial boundaries. An experiment, feel free to submit your pull requests! Ceramic kilns and workshops in the ancient world This repository contains GeoJSON map files about ceramic kilns and workshops ( ateliers ) in the ancient world: Classical antiquity, Eastern civilizations, pre-Columbian Americas, etc.. if it is an archaeological feature, it will be good for this repository. How to contribute You will need a GitHub...
Topics: Codeberg, code, software, git
open-archaeo
software

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What’s the correlation between the exposure time of your photographs and the time of the day? expotime What's the correlation between the exposure time of your photographs and the time of the day? Good question. With clever use of GExiv2 via Python, it's easy to extract the data from EXIF tags. I used R to plot the data. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-expotime_-_2020-08-08_08-20-45/steko-expotime_-_2020-08-08_08-20-45.bundle...
Topics: Codeberg, code, software, git
open-archaeo
software

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Fix the Exif.Image.Artist tag based on user input depending from the camera model. Useful if you have a bunch of photographs from different people all mixed up. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-fix-exif-artist_-_2020-03-25_20-46-58/steko-fix-exif-artist_-_2020-03-25_20-46-58.bundle and run: git clone steko-fix-exif-artist_-_2020-03-25_20-46-58.bundle Source: https://codeberg.org/steko/fix-exif-artist Uploader: steko Upload date:...
Topics: Codeberg, code, software, git
open-archaeo
software

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A Data Package specification for archaeological stratigraphy data following the Harris Matrix convention. Harris Matrix Data Package This repository contains archaeological stratigraphic datasets in CSVformat, following the table schema developed by Thomas S. Dye for the hm Lisp package ,together with a Python command-line tool that can check consistency ofdata with the format. Each dataset contains various tables and a data package descriptor( datapackage.json ) that enables consistency checks...
Topics: Codeberg, code, software, git
open-archaeo
software

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Shortcodes to describe inclusions in ceramic bodies To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-inclusions_-_2019-10-26_17-03-54/steko-inclusions_-_2019-10-26_17-03-54.bundle and run: git clone steko-inclusions_-_2019-10-26_17-03-54.bundle Source: https://codeberg.org/steko/inclusions Uploader: steko Upload date: 2019-10-26
Topics: Codeberg, code, software, git
open-archaeo
software

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An open source radiocarbon (14C) calibration software. Written in Python A radiocarbon calibration software DOI: https://doi.org/10.5281/zenodo.630455 IOSACal is the open source radiocarbon calibration software of the IOSA project. IOSACal includes: a programming library a web-based application a command-line program IOSACal is written in the Python programming language and it can runnatively on any platform where the Python interpreter is available,including all Linux distributions, MacOS X...
Topics: Codeberg, code, software, git
open-archaeo
software

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Kotyle is a software program for calculating the capacity of a ceramic vessel, like an amphora. The main use of Kotyle is for artifacts studied by archaeologists. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-kotyle_-_2020-06-23_23-00-02/steko-kotyle_-_2020-06-23_23-00-02.bundle and run: git clone steko-kotyle_-_2020-06-23_23-00-02.bundle Source: https://codeberg.org/steko/kotyle Uploader: steko Upload date: 2020-06-23
Topics: Codeberg, code, software, git
open-archaeo
software

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You have a sequence of numbered items and want to check if any are missing, which ones, how many gaps are found in the sequence, etc. missing You have a sequence of numbered items and want to check if any are missing,which ones, how many gaps are found in the sequence, etc. You're probably dealing with a museum inventory, an old paper log, anhistorical archive and you just can't get rid of those numbers (perhapsbecause there are cultural artifacts that have been marked with thosenumbers as...
Topics: Codeberg, code, software, git
open-archaeo
software

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Geometrical 2D analysis of archaeological walls. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-murature_-_2020-06-22_14-12-21/steko-murature_-_2020-06-22_14-12-21.bundle and run: git clone steko-murature_-_2020-06-22_14-12-21.bundle Source: https://codeberg.org/steko/murature Uploader: steko Upload date: 2020-06-22
Topics: Codeberg, code, software, git
open-archaeo
software

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Management system for physical storage of archaeological finds (ARCHIVED) To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-nervia_-_2020-06-22_07-37-06/steko-nervia_-_2020-06-22_07-37-06.bundle and run: git clone steko-nervia_-_2020-06-22_07-37-06.bundle Source: https://codeberg.org/steko/nervia Uploader: steko Upload date: 2020-06-22
Topics: Codeberg, code, software, git
open-archaeo
software

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Scripts to create QR-Code images for storage boxes. Each box has an associated web page describing its content, and the QR-Code serves as a short-link from the physical object to the web page. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-qrcode-storage_-_2020-06-22_14-11-12/steko-qrcode-storage_-_2020-06-22_14-11-12.bundle and run: git clone steko-qrcode-storage_-_2020-06-22_14-11-12.bundle Source: https://codeberg.org/steko/qrcode-storage...
Topics: Codeberg, code, software, git
open-archaeo
software

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These scrapers, when ready, will make it possible to aggregate severalexisting databases into one (giant) metadatabase of radiocarbon dates. They're written in Javascript with Node.js and the scraperjs library. You can do cool stuff with many thousand radiocarbon dates: Reconstructing regional population fluctuations in the European Neolithic using radiocarbon dates: a new case-study using an improved method To restore the repository download the bundle wget...
Topics: Codeberg, code, software, git
open-archaeo
software

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A set of best practices, how-tos and implementations for publishing pottery drawings on the Web as SVG To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-svg-pottery_-_2020-04-05_22-34-18/steko-svg-pottery_-_2020-04-05_22-34-18.bundle and run: git clone steko-svg-pottery_-_2020-04-05_22-34-18.bundle Source: https://codeberg.org/steko/svg-pottery Uploader: steko Upload date: 2020-04-05
Topics: Codeberg, code, software, git
open-archaeo
software

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Manuals for total stations total-station-manuals Manuals for total stations To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-total-station-manuals_-_2020-04-18_22-50-09/steko-total-station-manuals_-_2020-04-18_22-50-09.bundle and run: git clone steko-total-station-manuals_-_2020-04-18_22-50-09.bundle Source: https://codeberg.org/steko/total-station-manuals Uploader: steko Upload date: 2020-04-18
Topics: Codeberg, code, software, git
open-archaeo
software

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A git mirror of the tridas SVN repository from https://sourceforge.net/projects/tridas/ To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-tridas_-_2020-02-10_16-10-11/steko-tridas_-_2020-02-10_16-10-11.bundle and run: git clone steko-tridas_-_2020-02-10_16-10-11.bundle Source: https://codeberg.org/steko/tridas Uploader: steko Upload date: 2020-02-10
Topics: Codeberg, code, software, git
open-archaeo
software

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How does wikipedia see archaeology? To restore the repository download the bundle wget https://archive.org/download/gist.github.com-0d5e6526604e755b556f_-_2015-09-22_16-54-45/0d5e6526604e755b556f_-_2015-09-22_16-54-45.bundle and run: git clone 0d5e6526604e755b556f_-_2015-09-22_16-54-45.bundle Source: https://gist.github.com/0d5e6526604e755b556f Uploader: benmarwick Upload date: 2015-09-22
Topics: Gist, GitHub, code, software, git
open-archaeo
by benmarwick
software

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Scientific Computing Environment for archaeology: Installing R, Rstudio and other things on a lightweight Linux in a VirtualBox virtual machine To restore the repository download the bundle wget https://archive.org/download/gist.github.com-11204658_-_2018-05-14_19-32-35/11204658_-_2018-05-14_19-32-35.bundle and run: git clone 11204658_-_2018-05-14_19-32-35.bundle Source: https://gist.github.com/11204658 Uploader: benmarwick Upload date: 2018-05-14
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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Experimenting with the opencontext.org API using R To restore the repository download the bundle wget https://archive.org/download/gist.github.com-50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57/50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57.bundle and run: git clone 50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57.bundle Source: https://gist.github.com/50aa4c39b7d955d0ec40 Uploader: benmarwick Upload date: 2016-09-16
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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osl_calibration To restore the repository download the bundle wget https://archive.org/download/gist.github.com-5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04/5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04.bundle and run: git clone 5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04.bundle Source: https://gist.github.com/5f996a0f52ba1d92f76968119f941bd8 Uploader: benmarwick Upload date: 2016-05-10
Topics: Gist, GitHub, code, software, git
open-archaeo
by benmarwick
software

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R code for converting B&W jpgs of artefact silhouettes to matrices and computing basic Elliptical Fourier statistics, including PCA and MANOVA To restore the repository download the bundle wget https://archive.org/download/gist.github.com-6260541_-_2015-12-21_05-58-59/6260541_-_2015-12-21_05-58-59.bundle and run: git clone 6260541_-_2015-12-21_05-58-59.bundle Source: https://gist.github.com/6260541 Uploader: benmarwick Upload date: 2015-12-21
Topics: Gist, GitHub, code, software, git
open-archaeo
by benmarwick
software

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Plotting remote sensing data, especially how to go from XYZ data on an irregular grid to an interpolated raster To restore the repository download the bundle wget https://archive.org/download/gist.github.com-7331879_-_2015-12-27_20-29-23/7331879_-_2015-12-27_20-29-23.bundle and run: git clone 7331879_-_2015-12-27_20-29-23.bundle Source: https://gist.github.com/7331879 Uploader: benmarwick Upload date: 2015-12-27
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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Using R with wikipedia for various things To restore the repository download the bundle wget https://archive.org/download/gist.github.com-ac394fd61f481393b0ae_-_2020-06-14_18-15-41/ac394fd61f481393b0ae_-_2020-06-14_18-15-41.bundle and run: git clone ac394fd61f481393b0ae_-_2020-06-14_18-15-41.bundle Source: https://gist.github.com/ac394fd61f481393b0ae Uploader: benmarwick Upload date: 2020-06-14
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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Sketch of a look at the 'grand challenges' of Kintigh et al. 2014 (http://www.pnas.org/content/111/3/879.full) in five archaeology journals To restore the repository download the bundle wget https://archive.org/download/gist.github.com-d3eb3167ccb2116197ca_-_2015-08-29_14-00-53/d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle and run: git clone d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle Source: https://gist.github.com/d3eb3167ccb2116197ca Uploader: benmarwick Upload date: 2015-08-29
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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Make a stratigraphic-style plot-schematic of sediment colour using munsell values To restore the repository download the bundle wget https://archive.org/download/gist.github.com-f32cbc2fe7297ec9f276b52c118a249a_-_2019-03-16_00-28-14/f32cbc2fe7297ec9f276b52c118a249a_-_2019-03-16_00-28-14.bundle and run: git clone f32cbc2fe7297ec9f276b52c118a249a_-_2019-03-16_00-28-14.bundle Source: https://gist.github.com/f32cbc2fe7297ec9f276b52c118a249a Uploader: benmarwick Upload date: 2019-03-16
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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Program for analysing NGS data. angsd: Program for analysing NGS data. http://www.popgen.dk/angsd Installation: 1) Using a local folder containing htslib git clone https://github.com/samtools/htslib.git; git clone https://github.com/angsd/angsd.git; cd htslib;make;cd ../angsd;make HTSSRC=../htslib 2) Systemwide installation of htslib git clone https://github.com/angsd/angsd.git; cd angsd;make Notes I've switched over to using htslib for parsing single reads (to allow for CRAM reading, while...
Topics: GitHub, code, software, git
open-archaeo
software

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Tools for Geometric Morphometrics. The package includes tools of Virtual Anthropology to build virtual cavities as endocasts, to align two disarticulated models belonging to the same specimen, and functions to import and export format files into another format. Arothron Tools for Geometric Morphometrics. The package includes tools of Virtual Anthropology to build virtual cavities as endocasts, to align two disarticulated models belonging to the same specimen, and functions to import and export...
Topics: GitHub, code, software, git
open-archaeo
software

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Bayesian Modeling of Archaeological Chronologies ArchaeoChron Bayesian Modeling of Archaeological Chronologies ArchaeoChron provides a list of functions for the Bayesian modeling of archaeological chronologies. The Bayesian models are implemented in 'JAGS' ('JAGS' stands for Just Another Gibbs Sampler. It is a program for the analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. See http://mcmc-jags.sourceforge.net/ and "JAGS Version 4.3.0 user...
Topics: GitHub, code, software, git
open-archaeo
software

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Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases provides functions for the statistical analysis of archaeological dates and groups of dates. It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior...
Topics: GitHub, code, software, git
open-archaeo
software

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A comprehensive list of literature on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. The-ABM-in-Archaeology-Bibliography A selected yet comprehensive list of literature and resources on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. Know a missing resource or found a broken link? Put up a pull request ! Our very subjective list of must-reads Axtell, R. L., Epstein, J. M., Dean, J. S. Et...
Topics: GitHub, code, software, git
open-archaeo
software

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Cross-Sectional Geometry Tool (CSGR) CSGR Cross-Sectional Geometry tool (CSGR extracts and calculates from long bone cross sections (e.g. mesh derived from CT data) cortical thickness maps, and biomechanically pertinent cross-sectional geometric (CSG) properties. Authors Profico Antonio, Damiano Marchi and Paul O'Higgins To restore the repository download the bundle wget https://archive.org/download/github.com-Arothron-CSGR_-_2018-09-12_11-05-11/Arothron-CSGR_-_2018-09-12_11-05-11.bundle and...
Topics: GitHub, code, software, git
open-archaeo
software

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Computer Aided Archaeology - course website repository. smada Statistical methods for archaeological data analysis - course website repository. To restore the repository download the bundle wget https://archive.org/download/github.com-BernCoDALab-caa_-_2021-06-23_13-44-53/BernCoDALab-caa_-_2021-06-23_13-44-53.bundle and run: git clone BernCoDALab-caa_-_2021-06-23_13-44-53.bundle Source: https://github.com/BernCoDALab/caa Uploader: BernCoDALab Upload date: 2021-06-23
Topics: GitHub, code, software, git
open-archaeo
by Big-Ancient-Mediterranean
software

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A tool for the geospatial analysis, literary network visualization, and plot mapping of ancient texts To restore the repository download the bundle wget https://archive.org/download/github.com-Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16/Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle and run: git clone Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle Source: https://github.com/Big-Ancient-Mediterranean/BAM Uploader: Big-Ancient-Mediterranean Upload date: 2018-09-16
Topics: GitHub, code, software, git
open-archaeo
software

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R package to compute dissimilarity between multivariate time series distantia: an R package to compute the dissimilarity between multivariate time-series Summary The package distantia allows to measure the dissimilarity betweenmultivariate ecological time-series ( METS hereafter). The packageassumes that the target sequences are ordered along a given dimension,being depth and time the most common ones, but others such as latitudeor elevation are also possible. Furthermore, the target METS can...
Topics: GitHub, code, software, git
open-archaeo
software

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SNP calling and genotyping for damaged DNA AntCaller SNP calling and genotyping for damaged ancient DNA Usage This program is built on Python2.7 and can only be used for SAM/BAM files with MD field under Linux system. Copy three .py files to the directory where SAM/BAM files are stored. Print "python AntCaller-1.1.py -help" for detailed usage information. SNP calling can only be performed after extracting damage information and pileuping reads. Examples for BAM file (Require SAMtools...
Topics: GitHub, code, software, git
open-archaeo
software

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A repository listing Museums active on GitHub, written in Rstats Museums on Github This repository provides CSV raw data for museums active on Github. The following files are included from the GitHub api (accessed via authenticated requests): A list of museums with basic info A list of museum github api urls A list of museum extended github data (bio, repo numbers etc) To restore the repository download the bundle wget...
Topics: GitHub, code, software, git
open-archaeo
software

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R package for quantitative ethnobotany ethnobotanyR The goal of ethnobotanyR is to provide an easy-to-use platform forethnobotanists to work with quantitative ethnobotany assessments. Itclosely follows Tardio and Pardo-de-Santayana(2008) and Whitney etal. (2018) . Users of ethnobotanyR may find it useful to read the background papersand books on ethnobotany theory. In particular Albuquerque etal. (2019) and Gaoue etal. (2017) offer helpfulguidance to understanding theoretical approaches in...
Topics: GitHub, code, software, git
open-archaeo
software

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A simple adventure game in Unity2D. Revolves around being an archaeologist exploring some ruin and digging up treasure/fossils. ArchaeologyAdventure A simple adventure game in Unity2D. Revolves around being an archaeologist exploring some ruin and digging up treasure/fossils. To restore the repository download the bundle wget https://archive.org/download/github.com-Camology-ArchaeologyAdventure_-_2018-06-06_19-54-37/Camology-ArchaeologyAdventure_-_2018-06-06_19-54-37.bundle and run: git clone...
Topics: GitHub, code, software, git
open-archaeo
software

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None To restore the repository download the bundle wget https://archive.org/download/github.com-Chronomodel-chronomodel_-_2021-02-02_16-41-52/Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle and run: git clone Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle Source: https://github.com/Chronomodel/chronomodel Uploader: Chronomodel Upload date: 2021-02-02
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open-archaeo
software

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DRAC Calculator DRAC Calculator DRAC is a Dose Rate and Age Calculator which has been designed to calculate environmental dose rates (Ḋ) and ages for trapped charge dating applications. Code breakdown Directory structure:* /calculator - Calculator code* /pages - Page content (each page has a separate file)* /main - Web app initialisation code* /datatable-templates - Templates to write out the data tables* /downloads - Files available for download* /images - Images used* /test - PHPUnit test...
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open-archaeo
software

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PaleoView is a visualization tool for paleoclimatic modeling data. To restore the repository download the bundle wget https://archive.org/download/github.com-GlobalEcologyLab-PaleoView_-_2020-03-06_02-42-12/GlobalEcologyLab-PaleoView_-_2020-03-06_02-42-12.bundle and run: git clone GlobalEcologyLab-PaleoView_-_2020-03-06_02-42-12.bundle Source: https://github.com/GlobalEcologyLab/PaleoView Uploader: GlobalEcologyLab Upload date: 2020-03-06
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open-archaeo
software

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Core development repository. gitHub: Vsn 6 (2020 - ), Vsn 5 (2018 - 2020), Vsn 4 (2014-2017). Sourceforge: Vsn 3 (2009-2013), Vsn 1 & 2 (2005-2009) HEURIST Core development repository, Vsn 6 (2021 - ), Vsn 5 (2018 - 2020), Vsn 4 (2014-2017). Vsn 1 - 3 on Sourceforge (2005 - 2013) See below the intro for information on code, licensing, installating, contributing and issue tracking Heurist is a mature web-based data management infrastructure that is specifically tailored to the needs of...
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open-archaeo
software

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Tasks for Excavations in AutoCAD ArchJobCAD This repository comprises three LISP-functions for repeated tasks in archaeological excavations. The aims are efficient work and a homogeneous structure for easy retrieval. This is achieved with standardised named layers for filtering and the extensive use of blocks with attributes including labels of features, finds and profiles. The detailed explanations are in German but the code includes German as well as English comments. The functions are:...
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open-archaeo
software

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Tasks for Excavations in AutoCAD ArchJobCAD This repository comprises three LISP-functions for repeated tasks in archaeological excavations. The aims are efficient work and a homogeneous structure for easy retrieval. This is achieved with standardised named layers for filtering and the extensive use of blocks with attributes including labels of features, finds and profiles. The detailed explanations are in German but the code includes German as well as English comments. The functions are:...
Topics: GitHub, code, software, git
open-archaeo
software

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R Package - Aoristic analysis of archaeological data aoristAAR A R package for the aoristic analysis of archaeological data Installation aoristAAR is currently not on CRAN , but you can use devtools to install the development version. To do so: if(!require('devtools')) install.packages('devtools')library(devtools)install_github('ISAAKiel/aoristAAR') Licence aoristAAR is released under the GNU General Public Licence, version 3 . Comments and feedback are welcome, as are code contributions. To...
Topics: GitHub, code, software, git
open-archaeo
software

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Small command line tool for 14C calibration calibrator Calibrator is a small c++ command line tool to calibrate 14C dates. In can process inputs in csv, json or as cli parameters, and it outputs csv or json, that can be piped into a file. Usage Allowed arguments: -h [ --help ] Produce this help message. -i [ --input-file ] arg Specifies input file. -b [ --bp ] arg The BP Value. -s [ --std ] arg The standard deviation. -j [ --json-string ] arg Input as as JSON string. Format: {"bp":...
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open-archaeo
software

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Largest Empty Circles after Andreas Zimmermann Largest Empty Circles (LEC) after Zimmermann and Wendt. Tool for calculating the largest empty circles and estimation of archaeological sites theoretically to be expected in region of interest. This package is an implementation of the method published by Andreas Zimmermann and Karl Peter Wendt (Zimmermann/Wendt 2003). Method to do Installation if(!require('devtools')) install.packages('devtools')devtools::install_github("ISAAKiel/lecAAR")...
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open-archaeo
software

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R Package - Analyse geomagnetic data from archaeological context magAAR To restore the repository download the bundle wget https://archive.org/download/github.com-ISAAKiel-magAAR_-_2017-06-10_14-34-21/ISAAKiel-magAAR_-_2017-06-10_14-34-21.bundle and run: git clone ISAAKiel-magAAR_-_2017-06-10_14-34-21.bundle Source: https://github.com/ISAAKiel/magAAR Uploader: ISAAKiel Upload date: 2017-06-10
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open-archaeo
software

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R Package - Analysis of Archaeological Mortality Data mortAAR With mortAAR you can calculate a life table based on archaeological demographic data. You just need the number of people of a certain age, but you can also use single individual data. mortAAR allows to separate the data according to sex/location/epoch or any other grouping variable. What is a life table [aka discrete time survival analysis]? According to Chamberlain it is a "(...) mathematical device for representing the...
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open-archaeo
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Exchange data format (XML) for NoNeK (Nordmitteleuropäische Neolithische Keramik) nonekXML In order to simplify an exchange of data included in NoNeK (Nordmitteleuropäische Neolithische Keramik), an XML schema for this purpose is presented here(http://www.uf.uni-erlangen.de/projekte-der-juengeren-urgeschichte/nonek-nordmitteleuropaeische-neolithische-keramik/) To restore the repository download the bundle wget...
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R Package - Interaction with Oxcal oxcAAR oxcAAR (previously named roxcal ) is a collection of functions thatcan be used to execute OxCal from within R. Please note that there is a roxcal package package on GitHub,created by Gavin Simpson . If you justneed to import OxCal result files, you may consider using his package. License oxcAAR is released under the GNU General Public License, version2 . Comments and feedback arewelcome, as are code contributions. Installation To install the stable...
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open-archaeo
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R Package - Reconstruct Paths using Archaeological Monuments & Model Parameters of Infrastructure pathAAR R Package to reconstruct paths using archaeological monuments, model parameters of infrastructure and evaluate those parameters Archaeological remains of roads or infrastructure are rarely found, especially in earlier epochs. Usually, most premodern paths have been country lanes, which might be paved when needed. Hence, their preservation is linked to specific conditions, like...
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open-archaeo
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Python implementation for https://github.com/ISAAKiel/postAAR postAAR-python Python Implementation for https://github.com/ISAAKiel/postAAR Current algorithm for finding rectangles Previous algorithm for finding rectangles Commit https://github.com/ISAAKiel/postAAR-python/commit/b914c0a86412de4d88c57111c344c41d3f9503ff and before To restore the repository download the bundle wget...
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None postAAR The goal is to develop an automated process to detect buildings within large sets of postholes in multi-occupational sites, similar to the obsolete Windows-software "posthole" (http://www.uni-koeln.de/~al001/posthole.html) by Irwin Scollar. We start off with the original fortran-code by Karel Segeth. The first idea is to write a wrapper for R, perhaps moving to Python (with a QGIS-Plugin as final solution) at a later stage. To restore the repository download the bundle...
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QGIS plugin to transforms profile control points for fotogrammetric rectification from archaeological excavations. profileAAR A python PluginThe plugin profileAAR transforms profile control points for fotogrammetric rectification of profile images of archaeological excavations How to use profileAAR After installing and opening the plugin there is a "?"-Button in the Plugin. There you will find additional informations. QGIS 3 Install Qgis3 >3.6.0 You will find the Plugin in the...
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open-archaeo
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R Package - Quantitative Analysis in Archaeology quantAAR quantAAR contains tidy wrappers and useful utility function for common applications of exploratory statistics in archaeology: Wrapper functions: Correspondence Analysis : ca.ca_ca ( ca::ca ), ca.vegan_cca ( vegan::cca ) Principal Components Analysis : pca.stats_prcomp ( stats::prcomp ), pca.vegan_rda ( vegan::rda ) Seriation : seriation.seriation_seriate ( seriation::seriate ), seriation.tabula_seriate ( tabula::seriate ) Principal...
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open-archaeo
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Backend for one of the largest 14C-Database online. radon Backend for one of the largest 14C-Database online. The real RADON You can see a running version of the application at http://radon.ufg.uni-kiel.de/ . Installation This application is set up to use SQLite by default. Feel free to deploy it with another database system of your choice by altering the database.yml git clone git://github.com/ISAAKiel/radon.gitcd radonbundle installbundle exec rake db:setup Optional If you want to populate...
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open-archaeo
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R Package - 3D Reconstruction of Archaeological Excavations recexcavAAR R package for 3D reconstruction and analysis of excavations. It provides methods to reconstruct natural and artificial surfaces based on field measurements. This allows to spatially contextualize documented subunits and features. Intended to be part of a 3D visualization workflow. The following vignettes explain some of the implemented functions: >>Semiautomatic spit attribution < < >>Trench visualisation...
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open-archaeo
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An R package for the extraction, analysis and classification of (not only) archaeological objects from scanned images shapAAR This is an R package for the extraction, analysis and classification of (not only) archaeological objects derived from scanned images. Especially it aims at the analysis of the shapes/profiles of eg. ceramic vessels or arrow heads. Currently the extraction is implemented using active contour to identify and extract the shape informations. You can get an idea about its...
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downloads and prepares shkr data for analysis shkrdata Package for downloading and preparing shkr data for archaeological analysis. The database contains archaeological information from the Early Iron Age in South-West Germany. This package is intended to simplify the data access as well as some basic steps of the preparation of the data. For this purpose shkrdata comprises function for accessing the data as well as function wrapping functionality from our package moin...
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Human stature apprixmation according to different conveniant estimation formula. statuAAR Estimation of human stature from long bone measurements according to several well established estimation formula. For a general introduction: Siegmund, F. (2019). Die Körpergröße der Menschen in der Ur- und Frühgeschichte Mitteleuropas und ein Vergleich ihrer anthropologischen Schätzmethoden. (Beiträge zur Archäologie des Lebensstandards, 1). Norderstedt: BoD. Ruff, Chr. B. (ed.) (2018). Skeletal...
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open-archaeo
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A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage DamageProfiler This method can be used to calculate damage profiles of mapped ancient DNA reads. Main author: Judith Neukamm judith.neukamm@uzh.ch \Contributor: Alexander Peltzer, James A. Fellows Yates, and Alexander Hübner. Citation If you use the tool, please cite the publication: DamageProfiler Neukamm, J., Peltzer, A., & Nieselt, K. (2020). DamageProfiler: Fast damage pattern calculation for...
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open-archaeo
by Integrative-Transcriptomics
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None MADAM - iMproving Ancient Dna AsseMbly Dependencies The following software has to be installed in order for the software to run: jdk7+ bwa: http://bio-bwa.sourceforge.net/ samtools: http://samtools.sourceforge.net/ ClipAndMerge: https://github.com/apeltzer/ClipAndMerge sga: https://github.com/jts/sga SOAPdenovo2: https://sourceforge.net/projects/soapdenovo2/files/SOAPdenovo2/ MEGAHIT: https://github.com/voutcn/megahit qualimap: http://qualimap.bioinfo.cipf.es/ Note: Clip&Merge is...
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R Package - Explore SDS datasets (Systematic and digital documentation of stone artefacts) sdsanalysis sdsanalysis is the backbone of the sdsbrowser webapp. To learn more about it's role for this webapp please check the For developers section in the README over there. Beyond that sdsanalysis can be employed to analysis SDS stone artefact data in R. It offers two major functionalities for this purpose: Download available SDS datasets ?sdsdownload sdsanalysis offers functions to access openly...
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open-archaeo
by Johanna-Mestorf-Academy
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R Shiny App - Exploration and visualization of SDS datasets (Systematic and digital documentation of stone artefacts) sdsbrowser: sds.ufg.uni-kiel.de What is SDS? SDS ( Systematic and Digital Documentation of Stone Artefacts ) [1] is a recording system for stone artefacts. It was created as an uniform coding and standardized listing system of conventional attributes recorded at lithic inventories to enable well structured, quantitative, and comparative analysis. The variable collection in SDS...
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None DamMet, a full probabilistic model for mapping ancient methylomes DamMet is probabilistic model for mapping ancient methylomes using sequencing data underlying an ancient specimen.The model is implemented as a two step procedure. The first step recovers a maximum likelihood estimate (MLE) of the position specific deamination rates for methylated and unmethylated cytosine residues. The second step, making use of these deamination rates, returns a MLE of the methylation level in a...
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None epiPALEOMIX Pipeline Recently moved from BITBUCKET. A Fast, Accurate, and Automatic pipeline for generating nucleosome and methylation maps from high throughput sequencing data underlying ancient samples. Recent developments in ancient DNA research have shown that not only ancient genomes but ancient epigenomes can be recovered from high-throughput DNA sequence data. Although direct methods, such as bisulfite DNA treatment (Llamas et al. 2012) and target enrichment for methylated...
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INSIGHT has written several tools for Paolo Cignoni's Meshlab; these tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Meshlab Tools for Epigraphers These tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Before producing final plates for publication from 3D models, we find it...
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known pyramids of Ancient Egypt using python + OpenStreetMap OpenStreetMap of Pyramids of Ancient Egypt Man fears time, but time fears the Pyramids. Probably all of you saw maps of Ancient Egyptian sites (I had school workbook) in stylized way like this below: I wished to recreate this kind of map using Python and OpenStreetMap but the problem I faced was the absolute absence of some dataset or even list with coordinates of egyptian pyramids. So I took different historical sources, Google Maps,...
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open-archaeo
by Landesamt-fuer-Archaeologie-Sachsen
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QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS_arch QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS arch (T2G arch) is a QGIS plugin that serves as application module for archaeological on-site documentation. It is designed to work with the forked Tachy2GIS plugin. T2g_arch aims to provide functions for an effective workflow with a focus on on-site documentation of geometries using a total station. The plugin is designed to...
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for some tools in respect to pollen data processing (you might have guessed). Will turn into a package, maybe. pollen data processing for some tools in respect to pollen data processing (you might have guessed). Will turn into a packet, maybe. To restore the repository download the bundle wget https://archive.org/download/github.com-MartinHinz-pollen_data_processing_-_2018-05-23_12-54-10/MartinHinz-pollen_data_processing_-_2018-05-23_12-54-10.bundle and run: git clone...
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open-archaeo
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A page for video tutorials on R, specifically for archaeology To restore the repository download the bundle wget https://archive.org/download/github.com-MartinHinz-vitutr_-_2019-07-10_07-18-25/MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle and run: git clone MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle Source: https://github.com/MartinHinz/vitutr Uploader: MartinHinz Upload date: 2019-07-10
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Plugin for drawing trenches To restore the repository download the bundle wget https://archive.org/download/github.com-MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06/MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle and run: git clone MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle Source: https://github.com/MikeJJohnson/trenchdrawer Uploader: MikeJJohnson Upload date: 2016-05-10
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software

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Pipelines and tools for the processing of ancient and modern HTS data. To restore the repository download the bundle wget https://archive.org/download/github.com-MikkelSchubert-paleomix_-_2021-06-18_21-33-17/MikkelSchubert-paleomix_-_2021-06-18_21-33-17.bundle and run: git clone MikkelSchubert-paleomix_-_2021-06-18_21-33-17.bundle Source: https://github.com/MikkelSchubert/paleomix Uploader: MikkelSchubert Upload date: 2021-06-18
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open-archaeo
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Fluorescence fitting GUI. To restore the repository download the bundle wget https://archive.org/download/github.com-NSLS-II-PyXRF_-_2021-02-03_16-51-52/NSLS-II-PyXRF_-_2021-02-03_16-51-52.bundle and run: git clone NSLS-II-PyXRF_-_2021-02-03_16-51-52.bundle Source: https://github.com/NSLS-II/PyXRF Uploader: NSLS-II Upload date: 2021-02-03
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An open access digital archive of antique Christian texts Patristic Text Archive: An open access digital archive of antique Christian texts This is the data repository for all texts in the Patristic Text Archive . All texts and metadata are distributed according to Capitains guidelines and encoded according to the Patristic Text Archive Schema . LICENSE: The individual files are licensed by different Creative Commons Licenses. The respective license is mentioned in the header of each file. This...
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Development version of the R package 'Luminescence' Luminesence The R package ‘Luminescence’ by the R-Luminescence Group provides acollection of various R functions for luminescence dating data analysis. Social media and other resources Follow us on or visit our R-Luminescence homepage . Installation i. Requirements Windows (32/64bit) : Rtools (providedby CRAN) macOS : Xcode (provided by Apple) Linux : gcc often comes pre-installed inmost distributions. ii. Install the package Install any...
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R package 'RCarb' RCarb The R package 'RCarb' provides a collection of various R functionsto model dose rates in carbonate-rich samples. The package is atranslation of the 'MATLAB' program Carb by Roger P. Nathan. Installation of the developer version To install the latest development builds of 'RCarb' directly fromGitHub, run rif(!require("devtools")) install.packages("devtools")devtools::install_github("R-Lum/RCarb@master") To install a developer build other than...
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Solving Ordinary Differential Equations to Understand Luminescence RLumModel The R package ‘RLumModel’ by Johannes Friedrich (University ofBayreuth, Germany), Sebastian Kreutzer (IRAMAT-CRP2A, UniversitéBordeaux Montaigne, France) and Christoph Schmidt (University ofBayreuth, Germany) provides a collection of various R functionsmodelling luminescence signals in quartz andAl 2 O 3 , based on energy-band models. For an introduction and further details, visit the RLumModelhomepage ....
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R package: wrapper for the C++ library `xylib` rxylib The R package rxylib provides and access to the C++ library xylib by wrapping the library usingRcpp. For supported data formats see https://github.com/wojdyr/xylib . Installation i. Requirements Windows (32/64bit) : Rtools (providedby CRAN) macOS : Xcode (provided by Apple) Linux : gcc often comes pre-installed inmost distributions. ii. Install the package (development version) To install the stable version from CRAN, simply run the...
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alligator - Allen Transformer Alligator - Allen Transformer Prerequisites The code is developed using and tested with: maven 3.5.0 Netbeans 8.2 Apache Tomcat 8.0.27.0 JDK 1.8 Java EE 7 Web Maven The alligator web application is build using maven as WAR-file. For details have a look at pom.xml . Download and install maven and run it. Setup Download and install maven . Run git clone https://github.com/RGZM/alligator.git to create a local copy of this repository. Run mvn install to install all...
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open-archaeo
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This is a R-Project which uses transect data to define site sizes sitedefinition The goal of sitedefinition is to see, how feature densities might beused for site definition. To be published in “PraehistorischeZeitschrift” in 2019. Citation Please cite this compendium as: Authors, (2018). Title of compendium . Accessed 25 Jun 2018. Online at https://doi.org/xxx/xxx Installation You can install sitedefinition from github with: ``` r install.packages("devtools")...
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Repository containing lists of all published ancient metagenome samples (and related) ----[![License: CC BY 4.0](https://img.shields.io/badge/License-CC%20BY%204.0-orange.svg)](https://creativecommons.org/licenses/by/4.0/)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3980833.svg)](https://doi.org/10.5281/zenodo.3980833)![check_dataset](https://github.com/spaam-community/AncientMetagenomeDir/workflows/check_dataset/badge.svg)[![Joins us on...
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None AuthentiCT is a command-line tool to estimate the proportion of present-day DNA contamination in ancient DNA datasets generated from single-stranded libraries.It estimates contamination using an ancient DNA damage model and assumes that the contaminant is not deaminated. Installation: AuthentiCT requires Python 3.6+ and relies on a number of non-standard libraries. Here is the list of these dependencies with the versions that we used:- numpy (version 1.17.3)- numdifftools (version 0.9.39)-...
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open-archaeo
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A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs. Sex.DetERRmine A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs. Mathematical equations added to README using this tool . Instructions The python script takes a modified output from samtools depth as input, via stdin. The samtools depth file...
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None ADMUR Ancient Demographic Modelling Using Radiocarbon Tools to directly model underlying population dynamics using chronological datasets (radiocarbon and other) with a variety of models, including Continuous Piecewise Linear (CPL) model framework. Optional taphonomy. Model comparison framework using BIC. Package also calibrates 14C samples, and generates Summed Probability Distributions (SPD). CPL modelling directly estimates the most likely population trajectory given a dataset, using...
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open-archaeo
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Open Data Kit forms and conversion scripts used in archaeology. Including New Mexico LA Forms, photologs, etc. ODKArchForms Open Data Kit forms and conversion scripts used in archaeology. Including New Mexico LA Forms, photologs, etc. A series of Open Data Kit XLSForms and Python scripts to convert from XML to Acrobat PDF format. These digital forms are used for recording information on archaeological sites, including photo logs and forms specific to archaeology in New Mexico (LA Forms)....
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Tools to use and manipulate total station data totalstation-tools Tools to use and manipulate total station data Installation Requires a setup with python2.7. You can setup a virtualenv or conda env for this. Clone repository ``` clone repository from Github git clone https://github.com/WiseLabCMU/totalstation-tools.git clone totalopenstation as a submodule (if you do not want to set this up yourself, you should skip the submodule initialization) git submodule update --init``` Install...
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A simple html5 canvas game inspired by the research project of historiography of ancient Graeco-Roman religions GODS ON THE BARGE game CURRENT VERSION ROADMAP We are working on bugs and lot of ideas are still waiting for implementation.Uploaded 0.2beta version could be found on http://gehir.phil.muni.cz/godsonthebarge/. Version 0.2 [x] graphic design of icons [x] simple buildings system [x] simple events system [x] active abilities of cults [x] rebalancing the economic model [x] implementation...
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open-archaeo
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A web-based application to assist in geocoding of (mainly historical) datasets. Historical Geocoding Assistant Description The “Historical Geocoding Assistant” is an open-sourced browser-based application for assigning geographic coordinates in a more convenient and faster way than copy-pasting them from services such as Google Maps. The application was designed with historical projects in mind but is suitable for any geocoding work Essential Features works online with a live Google...
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None BROWSER GIS COLLECTOR (10.11.2016) Aim Mobile-oriented browser based application that could be used for data collection Code Repository https://github.com/adammertel/simple-browser-gis-collector Live Example https://coffeegnome.net/geoloc/ will be moved to Univie server Conditions cross-platform - application should be functional within all the major platforms mobile-oriented - design and functionality is created mainly for mobile users offline functionality - application shoud work in...
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open-archaeo
by adreinhard
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Colossal Cave Adventure digital palaeography and epigraphy project cca CCA Github ReadMeAndrew ReinhardJanuary 8, 2019 The files included in this repository and its subdirectories were either used or created by Andrew Reinhard in his Colossal Cave Adventure case study for the archaeology PhD at the University of York (UK). The goal of the case study was to determine if is possible to conduct stylometric and text analysis on game-code, and to see if any meaningful conclusions could be drawn from...
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Metadata scheme for National Register of Historic Places, transcribed from the National Park Service NPS Bulletin 16. National Register of Historic Places Metadata Scheme These tables represent portions of the metadata scheme for National Register of Historic Places, transcribed directly from the National Park Service National Register Bulletin 16 (Revised 1997). This repository is not the authoritative data source . Consult the National Park Service National Register Program for official...
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Proof of concept map for disaster response and archaeology. For Keeping History Above Water conference, 2017 disastermap Demonstration map for disaster response and archaeology. For Keeping History Above Water conference, 2017. This data should not be used for official planning or decision making. Demonstration available at https://aejolene.github.io/disastermap/ Presentation details: Archaeology Disaster Response A demonstration map for Keeping History Above Water Conference, November 1, 2017...
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Climate Response and Virginia Archaeology: Maps from Different Points of View Climate Response and Virginia Archaeology: Maps from Different Points of View Jolene Smith, Virginia Department of Historic Resources A Paper for the 48th Annual Middle Atlantic Archaeology Conference in Virginia Beach, VA. March 17, 2018. In Geospatial Studies in Middle Atlantic ArchaeologySession Organizer: Yvonne French (Northern Virginia Chapter, Archeological Society of Virginia) Introduction: Expectations for...
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Methods for calibrating and analysing radiocarbon dates rcarbon This package enables the calibration and analysis of radiocarbon dates, often but not exclusively for the purposes of archaeological research. It includes functions not only for basic calibration, uncalibration, and plotting of one or more dates, but also a statistical framework for building demographic and related longitudinal inferences from aggregate radiocarbon date lists, including: Monte-Carlo simulation test (Timpson et al...
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open-archaeo
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Package for modelling artefact-scale data rtfact Package for modelling archaeological artefact data To restore the repository download the bundle wget https://archive.org/download/github.com-ahb108-rtfact_-_2021-01-25_09-24-54/ahb108-rtfact_-_2021-01-25_09-24-54.bundle and run: git clone ahb108-rtfact_-_2021-01-25_09-24-54.bundle Source: https://github.com/ahb108/rtfact Uploader: ahb108 Upload date: 2021-01-25
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open-archaeo
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Assorted methods to supplement core spatial packages in R sparch Assorted methods to supplement core spatial packages in R To restore the repository download the bundle wget https://archive.org/download/github.com-ahb108-sparch_-_2021-02-01_09-55-02/ahb108-sparch_-_2021-02-01_09-55-02.bundle and run: git clone ahb108-sparch_-_2021-02-01_09-55-02.bundle Source: https://github.com/ahb108/sparch Uploader: ahb108 Upload date: 2021-02-01
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Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric CIRV Ceramic_Dashboard Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric Central Illinois River Valley (CIRV). To learn more about the Late Prehistoric CIRV, take a look at The Mississippian Period and The Late Mississippian Period in this pdf document. This flexdashboard is a companion to Chapter 6 of the recently completed dissertation by Andrew Upton at Michigan...
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Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility LA ICP MS-Routines_FMNH Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility Significant contributions include:- Reading in large amounts of cleaned LA-ICP-MS data from xlsx files with each day as a separate sheet- Tidying the LA-ICP-MS data into a tidy data frame- Functions for converting elements calculated as % oxide to ppm- Writing the file to a csv in...
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Peer reviewed and indexed articles published on Caddo archaeology since 2000. caddonet Peer reviewed and indexed articles published on Caddo archaeology since 2000. To restore the repository download the bundle wget https://archive.org/download/github.com-aksel-blaise-caddonet_-_2020-04-03_11-10-46/aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle and run: git clone aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle Source: https://github.com/aksel-blaise/caddonet Uploader: aksel-blaise Upload...
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