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Data from Uerpmann 1987, The Ancient Distribution of Ungulate Mammals in the Middle East, TAVO A27 Uerpmann 1987, The Ancient Distribution of Ungulate Mammals in the Middle East , TAVO A27 This repository contains data from Uerpmann’s (1987), The AncientDistribution of Ungulate Mammals in the MiddleEast ,volume 27 of the Tübinger Atlas des Vorderen Orients (TAVO), Series A. Uerpmann catalogued the occurrence of ungulate taxa in animal boneassemblages from 196 sites across the Middle East,...
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open-archaeo
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QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS_arch QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS arch (T2G arch) is a QGIS plugin that serves as application module for archaeological on-site documentation. It is designed to work with the forked Tachy2GIS plugin. T2g_arch aims to provide functions for an effective workflow with a focus on on-site documentation of geometries using a total station. The plugin is designed to...
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Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility LA ICP MS-Routines_FMNH Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility Significant contributions include:- Reading in large amounts of cleaned LA-ICP-MS data from xlsx files with each day as a separate sheet- Tidying the LA-ICP-MS data into a tidy data frame- Functions for converting elements calculated as % oxide to ppm- Writing the file to a csv in...
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open-archaeo
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R Package - Quantitative Analysis in Archaeology quantAAR quantAAR contains tidy wrappers and useful utility function for common applications of exploratory statistics in archaeology: Wrapper functions: Correspondence Analysis : ca.ca_ca ( ca::ca ), ca.vegan_cca ( vegan::cca ) Principal Components Analysis : pca.stats_prcomp ( stats::prcomp ), pca.vegan_rda ( vegan::rda ) Seriation : seriation.seriation_seriate ( seriation::seriate ), seriation.tabula_seriate ( tabula::seriate ) Principal...
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open-archaeo
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Sketch of a look at the 'grand challenges' of Kintigh et al. 2014 (http://www.pnas.org/content/111/3/879.full) in five archaeology journals To restore the repository download the bundle wget https://archive.org/download/gist.github.com-d3eb3167ccb2116197ca_-_2015-08-29_14-00-53/d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle and run: git clone d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle Source: https://gist.github.com/d3eb3167ccb2116197ca Uploader: benmarwick Upload date: 2015-08-29
Topics: Gist, GitHub, code, software, git
open-archaeo
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CharTool is a macro tool for quantifying charcoal particles for paleoecological research applications. The Charcoal Quantification Tool (CharTool): A suite of open-source tools for quantifying charcoal fragments in archaeological and paleoecological analysis 2020 CharTool is a suite of macro tools for quantifying charcoal fragment metrics and sediment attributes in archaeological, paleoecological, and paleo-fire science contexts. This folder contains ImageJ version 1.52 with CharTool installed...
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Software to call ROHs hapROH Software to call ROH from ancient and present-day DNA using reference haplotypes.Author: Harald Ringbauer, September 2020Code released under GNU General Public License v3.0 Development Code behind python package hapROH.See https://pypi.org/project/hapROH/ for detail about the current version and installation. This is the git repository for development, as well as code used in the hapROH publication(Preprint at https://doi.org/10.1101/2020.05.31.126912) This code is...
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open-archaeo
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Piwigo plugin for viewing 3D models using 3DHOP piwigo-3dhop piwigo-3dhop is a plugin for Piwigo that allows 3D models to be added to galleries and viewed using 3DHOP . 3DHOP currently supports models in .ply and .nxs format. Other files may be added to Piwigo using the "multiple formats" functionality but cannot be viewed directly. Installation From Piwigo The easiest way to install the plugin is from within Piwigo. Search for '3dhop' in the plugin manager, click 'install', and then...
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open-archaeo
software

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:hourglass: Analysis of Chronological Patterns from Archaeological Count Data kairos Overview A toolkit for absolute dating and analysis of chronological patterns.This package includes functions for chronological modeling and dating ofarchaeological assemblages from count data. It allows to compute timepoint estimates (e.g. Mean Ceramic Date) and density estimates of theoccupation and duration of an archaeological site. Initial development is in progress. Installation You can install the...
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open-archaeo
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A Bayesian radiocarbon chronology model with R New: Bchron website Bchron is a Bayesian chronology model implemented in R. The package enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine...
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Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric CIRV Ceramic_Dashboard Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric Central Illinois River Valley (CIRV). To learn more about the Late Prehistoric CIRV, take a look at The Mississippian Period and The Late Mississippian Period in this pdf document. This flexdashboard is a companion to Chapter 6 of the recently completed dissertation by Andrew Upton at Michigan...
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open-archaeo
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Management system for physical storage of archaeological finds (ARCHIVED) To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-nervia_-_2020-06-22_07-37-06/steko-nervia_-_2020-06-22_07-37-06.bundle and run: git clone steko-nervia_-_2020-06-22_07-37-06.bundle Source: https://codeberg.org/steko/nervia Uploader: steko Upload date: 2020-06-22
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open-archaeo
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Datasets used in Binford's 2001 book "Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets" binford This package contains datasets used in: Binford, Lewis R. 2001. Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets University of California Press, Berkeley. This package contains three datasets: LRB : environmental and...
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open-archaeo
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A page for video tutorials on R, specifically for archaeology To restore the repository download the bundle wget https://archive.org/download/github.com-MartinHinz-vitutr_-_2019-07-10_07-18-25/MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle and run: git clone MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle Source: https://github.com/MartinHinz/vitutr Uploader: MartinHinz Upload date: 2019-07-10
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Iterative Deterministic Seriation Solution Seriation Algorithms, implementations, manuscripts, and test cases for iterative deterministic frequency seriation done by agglomeration. These algorithms are intended to automate and extend the initial, mainly manual implementation of IDSS in Lipo (2001). commandline: python ./IDSS.py --inputfile=../testdata/pfg.txt --xyfile=../testdata/pfgXY.txt --largestonly=1 --mst=1 --screen=1 as a module: import IDSSseriation= IDSS() args={}args['inputfile']...
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open-archaeo
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Map of the Roman Empire made with vector tiles Roman Empire Roman Empire Map made with vector tiles :globe with meridians: Browse the map Edit online Blog posts: http://commons.pelagios.org/2017/11/building-the-roman-empire-vector-tile-map/ http://commons.pelagios.org/2017/09/rdg-update-the-roman-empire-vector-map-project/ More information at: Source: Digital Atlas of the Roman Empire Further information at OpenMapTiles.org To restore the repository download the bundle wget...
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A digital Babylonian clock babylonian-hours This is a javascript based digital clock which computes your local time in 'seasonal-hours'. It's currently hosted at www.babylonianhours.com . To restore the repository download the bundle wget https://archive.org/download/github.com-willismonroe-babylonian-hours_-_2019-01-05_20-36-50/willismonroe-babylonian-hours_-_2019-01-05_20-36-50.bundle and run: git clone willismonroe-babylonian-hours_-_2019-01-05_20-36-50.bundle Source:...
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open-archaeo
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R package for spatial sampling and survey simulation fieldwalkr fieldwalkr is a tool for designing and evaluating sampling strategies in spatial survey ( fieldwalking in archaeological jargon).It contains functions for simulating the effect of different survey units, sampling methods and detection functions on the estimation of randomly generated or observed point processes. Installation {r}devtools::install_github("joeroe/fieldwalkr") Demo An introduction to and short demonstration...
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open-archaeo
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Digital Encyclopedia of Archaeologists deoa Digital Encyclopedia of Archaeologists To restore the repository download the bundle wget https://archive.org/download/github.com-msu-anthropology-deoa_-_2017-11-29_06-22-59/msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle and run: git clone msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle Source: https://github.com/msu-anthropology/deoa Uploader: msu-anthropology Upload date: 2017-11-29
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Plugin for drawing trenches To restore the repository download the bundle wget https://archive.org/download/github.com-MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06/MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle and run: git clone MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle Source: https://github.com/MikeJJohnson/trenchdrawer Uploader: MikeJJohnson Upload date: 2016-05-10
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open-archaeo
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Bindings to the tDAR API tdar This package allows programmatic access to the Digital ArchaeologicalRecord (tDAR) , a service of DigitalAntiquity . Installation You can install tdar from github with: # install.packages("devtools")devtools::install_github("bocinsky/tdar") Please note that this project is released with a Contributor Code ofConduct . By participating in this project you agree toabide by its terms. Basic usage Authentication tDAR authentication is handled through...
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open-archaeo
software

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An R package to simulate species occurences and abundances (counts) along gradients coenocliner Released version Build status What is coenocliner? An R package to simulate species abundances (counts) along gradients One of the key ways quantitative ecologists attempt to understand the properties and behaviour of the methods they use or dream up is through the use of simulated data. There are a number of computer programmes for simulating ecological data along gradients, such as Peter Minchin's...
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open-archaeo
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None zoolog : Zooarchaeological Analysis with Log-Ratios Jose M Pozo , Silvia Valenzuela-Lamas , Angela Trentacoste , Ariadna Nieto-Espinet and Silvia Guimarães Chiarelli The R package zoolog includes functions and reference data togenerate and manipulate log-ratios (also known as log size index (LSI)values) from measurements obtained on zooarchaeological material. Logratios are used to compare the relative (rather than the absolute)dimensions of animals from archaeological contexts (Meadow...
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Quantum GIS plugin for visibility analysis Advanced viewshed analysis for QGIS Version: 1.2 Supported QGIS version: 3.x Licence: GNU GPLv3 Documentation : zoran-cuckovic.github.io/QGIS-visibility-analysis/ Author: Zoran Čučković ( web page ) Introduction: Viewshed analysis plugin for QGIS calculates visible surface from a given observer point over a digital elevation model. The plugin is intended for more complex modelling, such as the depth below the visible horizon or generation of...
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open-archaeo
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A dataset of Roman amphitheaters. About 'roman-amphitheaters' is a digital resource that collects information about Roman amphitheaters with a primary goal being the easy use of its data in a wide variety of computational environments. It is designed to support open-ended inquiry into the place and role of amphitheaters in the Roman Empire. The file 'roman-amphitheaters.geojson' holds the latest information and is the source for other derived files, including 'roman-amphitheaters.csv' and the...
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open-archaeo
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Collection of 250+ datasets for photogrammetry Photogrammetry Datasets This is a collection of datasets for photogrammetry. A csv-table with 350+ datasets can be downloaded from this repository: datasets.csv . Contents Dataset,Camera,Category,Author,Organisation/Project,Source,Dataset link,Images,Size in GB,Ground Truth,License,License link,SampleImage,Image Format,DOI,Masks,Description The list includes a large variety of image sets and sizes.From small (
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open-archaeo
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Synthetic Categories for Archaeological Vessel Comparison synthkat Synthetic Categories for Archaeological Vessel Comparison Synthkat is a computational initiative to construct flexible, synthetic categories of established ceramic and glass vessel classifications and typologies of the ancient Roman world. It will take a collection of different vessel-types, expressed as a set of attributes, and recategorize them to allow for cross-project comparison of assemblages. Project files and algorithms...
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R-script for conducting and evaluating bootstrapped correspondence analyses following methods published by Peeples and Schachner (2012) in the Journal of Archaeological Science Bootstrap-Correspondence-Analysis R-script for conducting and evaluating bootstrapped correspondence analyses following methods published by Peeples and Schachner (2012) in the Journal of Archaeological Science This code relates to the following article: Peeples, Matthew A. and Gregson Schachner2012 Refining...
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Script for conducting K-means cluster analysis using R. This script provides output designed to help the user select an appropriate cluster solution. Kmeans Script for conducting K-means cluster analysis using R. This script provides output designed to help the user select an appropriate cluster solution. K-means Cluster Analysis:K-means analysis is a divisive, non-hierarchical method of defining clusters. This is an iterative process, which means that at each step the membership of each...
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Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data cranial-sex-estimation-code Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data To reimplement the analysis grab the morphometric feature dataset from https://zenodo.org/record/3632180 and save the relevant files into the corresponding folders. Keep the current directory structure and from within GNU Octave command window enter the ./analysis...
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open-archaeo
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Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology AtlantGIS Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology. All AtlantGIS data are published under a CC-BY-SA 4.0 license. The idea is to create artificial data creatively referring to the story of Atlantis as told by Platon.We believe that simple datasets with a narrative are most qualified to impart knowledge and skills to...
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open-archaeo
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Plotting remote sensing data, especially how to go from XYZ data on an irregular grid to an interpolated raster To restore the repository download the bundle wget https://archive.org/download/gist.github.com-7331879_-_2015-12-27_20-29-23/7331879_-_2015-12-27_20-29-23.bundle and run: git clone 7331879_-_2015-12-27_20-29-23.bundle Source: https://gist.github.com/7331879 Uploader: benmarwick Upload date: 2015-12-27
Topics: Gist, GitHub, code, software, git
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A tool for the geospatial analysis, literary network visualization, and plot mapping of ancient texts To restore the repository download the bundle wget https://archive.org/download/github.com-Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16/Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle and run: git clone Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle Source: https://github.com/Big-Ancient-Mediterranean/BAM Uploader: Big-Ancient-Mediterranean Upload date: 2018-09-16
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Bayesian Modeling of Archaeological Chronologies ArchaeoChron Bayesian Modeling of Archaeological Chronologies ArchaeoChron provides a list of functions for the Bayesian modeling of archaeological chronologies. The Bayesian models are implemented in 'JAGS' ('JAGS' stands for Just Another Gibbs Sampler. It is a program for the analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. See http://mcmc-jags.sourceforge.net/ and "JAGS Version 4.3.0 user...
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open-archaeo
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Gianmarco Alberti Miscellaneous GmAMisc (Gianmarco Alberti Miscellaneous) vers 0.24 GmAMisc is a collection of functions that I have built in different points in time. The functions' aim spans from univariate outlier detection, to permutation t test, permutation chi-square test, calculation of Brainerd-Robinson similarity coefficient, validation of logistic regression models, point pattern analysis, and more. The package comes with some toy datasets: assemblage : distribution of 7...
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Script for calculating mean ceramic dates based on tabular data. This script also estimates sampling error using a bootstrapping procedure. Mean-Ceramic-Date-and-Error-Estimation Script for calculating mean ceramic dates based on tabular data. This script also estimates sampling error using a bootstrapping procedure. Mean Ceramic Dates:The mean ceramic date (MCD) of an assemblage is a point estimate of the occupation of a site calculated based on the frequency and date range of types present,...
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open-archaeo
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graphical interface for DRAC To restore the repository download the bundle wget https://archive.org/download/github.com-dstreble-shiny_DRAC_-_2016-11-02_16-04-27/dstreble-shiny_DRAC_-_2016-11-02_16-04-27.bundle and run: git clone dstreble-shiny_DRAC_-_2016-11-02_16-04-27.bundle Source: https://github.com/dstreble/shiny_DRAC Uploader: dstreble Upload date: 2016-11-02
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Yet Another Demographic Analysis package yada yada , which stands for Yet Another Demographic Analysis package,supports a variety of demographic tasks, with most applications drawnfrom forensic anthroplogy and archaeology. Installation You can install yada with: rdevtools::install_github("eehh-stanford/yada") Contributing Please note that the ‘yada’ project is released with a Contributor Codeof Conduct . By contributing to thisproject, you agree to abide by its terms. To restore...
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Models and Utility Functions for Bayesian Analyses of Radiocarbon Dates with NIMBLE nimbleCarbon The nimbleCarbon package provides utility functions and bespoke probability distributions for the Bayesian analyses of radiocarbon dates using the NIMBLE framework. The package is particularly suited for demographic inferences based on changing frequencies of radiocarbon dates and enables parameter estimations and model comparison for the following population growth models (see Crema and Shoda 2021...
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An R package for the extraction, analysis and classification of (not only) archaeological objects from scanned images shapAAR This is an R package for the extraction, analysis and classification of (not only) archaeological objects derived from scanned images. Especially it aims at the analysis of the shapes/profiles of eg. ceramic vessels or arrow heads. Currently the extraction is implemented using active contour to identify and extract the shape informations. You can get an idea about its...
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The R-script implements a means for statistically assessing the degree of co-occurrence between classes within a dataset based on an idea origially suggested by James Allison at BYU and published by Keith Kintigh in 2006. Binomial-Co-occurrence-Assessment The R-script implements a means for statistically assessing the degree of co-occurrence between classes within a dataset based on an idea origially suggested by James Allison at BYU and published by Keith Kintigh in 2006. I have implemented...
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Method for dating admixture in ancient DNA specimens DATES DATES (Distribution of Ancestry Tracts of Evolutionary Signals) is a method to estimate the time of admixture in ancient DNA samples described in Narasimhan, Patterson et al. 2018 Installation To make the DATES executable, you will need the following libraries: GSL 2.5 (https://www.gnu.org/software/gsl/)OpenBLAS 0.2.20 (www.openblas.net)FFTW 3.3.8 (http://www.fftw.org/download.html)````You will need to edit the file ``Makefile`` and...
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None Introduction to Analysing Archaeological Radiocabon Ages Using R Ben Marwick, July 2020 Overview In this workshop we will practice some techniques for analysingarchaeological radiocabon ages using R. Here are the slides . Here’s the outline of keytopics: Calibrate and plot a single age Calibrate and plot multiple ages Combine and plot multiple ages using non-parametric phase estimation Age-depth modelling Summed probability density plots Hypothesis testing with SPDs You can download the...
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Code repository of the book by Oliver Nakoinz and Daniel Knitter "Modelling Human Behaviour in Landscapes -- Basic concepts and modelling elements" mhbil Code repository of the book by Oliver Nakoinz and Daniel Knitter "Modelling Human Behaviour in Landscapes -- Basic concepts and modelling elements" published by Springer in 2016. You can get the book here: at Springer Worldcat link What will you find here? the code of the different chapters the data used within the book Why...
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None R-Scripts This contains a set of data about human mobility, subsistance, population, and environmental productivity derived from the Standard Cross Cultural Sample . Missing cases have been filled in via Multiple Imputation. It also contains a suite of R scripts for processing these data. Included routines are cluster analyses, Multidimentional Scaling, and Canonical Correspondence analysis. Plotting commands are also included. These data and analyses were used in my article "Towards...
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paleofire package paleofire paleofire: an R package to analyse sedimentary charcoal records from the Global Charcoal Database to reconstruct past biomass burning The paleofire package provides tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database (see http://gpwg.paleofire.org for details). Main functionalities includes data extraction and sites selection, transformation and homogenization of the charcoal records as well as regional to global compositing....
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iDAI.field | Archaeological Field Recording App by the German Archaeological Institute iDAI.field This is a monorepo containing three packages: iDAI.field Desktop : The iDAI.field desktop client based on AngularJS and Electron iDAI.field Mobile : The iDAI.field mobile client based on React Native iDAI.field Core : Shared TypeScript modules Development The repository uses lerna to manage sub-package dependecies.When first checking out the code base, bootstrap the dependencies with: $ npm run...
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Manuals for total stations total-station-manuals Manuals for total stations To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-total-station-manuals_-_2020-04-18_22-50-09/steko-total-station-manuals_-_2020-04-18_22-50-09.bundle and run: git clone steko-total-station-manuals_-_2020-04-18_22-50-09.bundle Source: https://codeberg.org/steko/total-station-manuals Uploader: steko Upload date: 2020-04-18
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:globe_with_meridians: Sourcing Archaeological Materials by Chemical Composition nexus Exploration and analysis of compositional data in the framework ofAitchison (1986). This package provides tools for chemicalfingerprinting and source tracking of ancient materials. Initial development is in progress. Installation You can install the released version of nexus from CRAN with: rinstall.packages("nexus") And the development version from GitHub with: ``` r...
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A web-based application to assist in geocoding of (mainly historical) datasets. Historical Geocoding Assistant Description The “Historical Geocoding Assistant” is an open-sourced browser-based application for assigning geographic coordinates in a more convenient and faster way than copy-pasting them from services such as Google Maps. The application was designed with historical projects in mind but is suitable for any geocoding work Essential Features works online with a live Google...
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The Southwest Taphonomic Protocol swtp This repository contains the data and code for our paper: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). The Southwestern Taphonomic Protocol . In review. How to cite Please cite this compendium as: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). Compendium of R code and data for ‘The Southwestern Taphonomic Protocol’ . Accessed 10 Dec 2020. Contents The :file_folder: paper directory contains:...
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A QGIS plugin to simplfy digitization of archaeological plans drawn using the Museum of London Single Context Recording methodology. ARK Spatial A QGIS plugin for Archaeological Recording.Part of the Archaeological Recording Kit by L-P : Archaeologyhttp://ark.lparchaeology.com Installation Currently ARK Spatial must be manually installed via a Git clone and pb_tool. Clone the repository from GitHub: 'git clone https://github.com/lparchaeology/ArkPlan.git' Initialise the Git submodules: 'cd...
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Harris Matrix Visualization for the web using D3 + KLayJS-D3 Harris Matrix Visualization Converting Harris Matrix Composer XML The command line utility hmc2json.py , written in Python 3.5, will convert Harris Matrix Composer-style GraphML data to JSON Graph Format . Data exported from Harris Matrix Composer is packaged as a zip file with two XML documents: project.xml and matrix.xml . The latter contains the necessary graph data. ```sh$ unzip matrix.hmcx $ ./hmc2json.py matrix.xml matrix.json...
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R and Stan code for fitting geographic models of artifact class diversity. Artifact Class Diversity This project contains R (www.r-project.org) and Stan (www.mc-stan.org) scripts that estimate artifact class diversity in multiple geographic regions. Point Diversity.R This script requires two csv files: geogdata.csv and point data.csv . The former csv file contains a row for every administrative unit under consideration (e.g., counties, states), with the first column consisting of unique...
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skyscapeR: an R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. skyscapeR skyscapeR is a open source R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. It is intended to become a fully-fledged, transparent and peer-reviewed package offering a robust set of quantitative methods while retaining simplicity of use. For information on how to use skyscapeR...
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R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation bleiglas bleiglas is an R package that employs Voro++ for the calculation of threedimensional Voronoi diagrams from input point clouds. This is a specialform of tessellation where each polygon is defined as the area closestto one particular seed point. Voronoi diagrams have useful applicationsin - among others - astronomy, material science or geography andbleiglas provides functions to make 3D tessellation...
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Allen relations from Bayesian calibration Function determine.allen.relation() Compare two indefinite intervals produced by a Bayesian calibration using the Allen algebra, display a graphical summary of the Allen relation set based on the Nökel lattice, optionally save the graphical summary to a file, and return a list containing the frequency of each basic relation in the Bayesian calibration, the Allen relation set, a statement whether or not the Allen relation set is concurrent, the basic...
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Interchange Tools for Multi-Parameter Spatiotemporal Data mudata2 The mudata2 package provides tools to read, write, and documentmulti-parameter spatiotemporal data. Installation You can install mudata2 from CRAN with: rinstall.packages("mudata2") Or alternatively, you can the development version from github with: ``` r install.packages("remotes") remotes::install_github("paleolimbot/mudata")``` What is mudata? The mudataformat is adata table in a specific form,...
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Element Sourcing in R ElementSourcing Element Sourcing in R This R script is designed to source archaeological artifacts using elemental composition. It is primarily being designed to source obsidian, but I plan to adapt it for broader uses. To restore the repository download the bundle wget https://archive.org/download/github.com-bischrob-ElementSourcing_-_2018-02-06_20-35-44/bischrob-ElementSourcing_-_2018-02-06_20-35-44.bundle and run: git clone...
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Roman Peasant Project Small Finds Ontology Small Finds from Roman Peasant Project (2009-2014): Technical notes on a behavioral analysis of Roman sites in rural Tuscany. Information may also be found at https://volweb.utk.edu/~scolli46/rppsf.html . The code below depends on the following csv files which contain the semantic graph, as the original graph was composed in Gephi and exported: dataset.csv - table of small finds listed by site, phase, and definition, by count and weight. nodes.csv -...
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An R package that collects together data for the ancient world. Collected Ancient World data sets for R. Install with Sdevtools::install_github("sfsheath/cawd") See the 'data' directory for current list of R objects provided. And run data() in R to see the same but formatted. rmarkdown examples of using cawd See the inst/rmarkdown directory for source code. The following links are to rendered html files in the gh-pages branch of this repository....
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You have a sequence of numbered items and want to check if any are missing, which ones, how many gaps are found in the sequence, etc. missing You have a sequence of numbered items and want to check if any are missing,which ones, how many gaps are found in the sequence, etc. You're probably dealing with a museum inventory, an old paper log, anhistorical archive and you just can't get rid of those numbers (perhapsbecause there are cultural artifacts that have been marked with thosenumbers as...
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Dataset of 10,647 radiocarbon dates from the Near East from the Late Pleistocene until the Late Holocene (ca. 14 - 2 kya BP). NERD (Near East Radiocarbon Dates) Alessio Palmisano, Andrew Bevan, Dan Lawrence & Stephen Shennan The archive NERD provides a collation of 10,647 radiocarbon dates from 999 archaeological sites in the Near East from the Late Pleistocene until the Late Holocene (ca. 14 - 2 kya). These dates have been collected from existing online digital archives, and electronic and...
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A directory of GitHub projects by OR for archaeologists Archaeology @ GitHub This is a directory of GitHub projects by OR for archaeologists. Submit pull requests to add new projects. Of course, you can also submit links to git repos elsewhere, or to Mercurial repos, etc. The focus of this directory is not on the software per se , but rather on the fact that git is used to develop and share source code, literate programming resources, archaeological data, etc. Stuff seen at #caasiena (not...
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INSIGHT has written several tools for Paolo Cignoni's Meshlab; these tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Meshlab Tools for Epigraphers These tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Before producing final plates for publication from 3D models, we find it...
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None AuthentiCT is a command-line tool to estimate the proportion of present-day DNA contamination in ancient DNA datasets generated from single-stranded libraries.It estimates contamination using an ancient DNA damage model and assumes that the contaminant is not deaminated. Installation: AuthentiCT requires Python 3.6+ and relies on a number of non-standard libraries. Here is the list of these dependencies with the versions that we used:- numpy (version 1.17.3)- numdifftools (version 0.9.39)-...
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CRAN Task View: Archaeological Science CRAN Task View: Archaeological Science Maintainer: Ben Marwick Contact: benmarwick at gmail.com Version: 2020-12-26 This CRAN Task View contains a list of packages useful for scientific work in Archaeology, grouped by topic. Note that this is not an official CRAN Task View, just one I have prepared for my own convenience, so it includes some packages only on GitHub and other non-CRAN resources I find useful. Many of the most highly recommended packages...
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Bayesian reconstruction of ancient DNA fragments leeHom: Bayesian reconstruction of ancient DNA fragments QUESTIONS: gabriel [dot] reno [ at sign ] gmail.com About leeHom is a program for the Bayesian reconstruction of ancient DNA (the binary is mergeTrimReadsBAM). Downloading: Go to https://github.com/grenaud/leeHom and do one of the following: Clone the repository: git clone --recursive https://github.com/grenaud/leeHom.git Download the ZIP archive and then manually download the submodules...
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Southwest Asian Palaeoarchaeology Data S outh w est A sian P alaeoarchaeology Data A collection of archaeological datasets and tools related to the prehistory of Southwest Asia. Installation You can install the development version of swapdata from GitHub using the remotes package : rremotes::install_github("joeroe/swapdata") To restore the repository download the bundle wget...
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Importing Data from iDAI.field 2 into R idaifieldR idaifieldR imports data from the iDAI.field 2 database into R. The core functions of this package use sofa (available on CRAN) to connect to a running iDAI.field 2-client and store the whole database in a list in R (in memory), avoiding the csv-export that would otherwise be needed and gathering all documents at once, which is not possible with said csv-export. Any R-Script using idaifieldR to import the database can be re-run and updated with...
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Dédalo: Cultural Heritage & Oral History Management System To restore the repository download the bundle wget https://archive.org/download/github.com-renderpci-dedalo_-_2021-01-16_08-50-03/renderpci-dedalo_-_2021-01-16_08-50-03.bundle and run: git clone renderpci-dedalo_-_2021-01-16_08-50-03.bundle Source: https://github.com/renderpci/dedalo Uploader: renderpci Upload date: 2021-01-16
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A dataset and discussion relating to Roman amphitheaters Most recent draft release: Permanent DOI for link to all versions: https://doi.org/10.5281/zenodo.596149 roman-amphitheaters Edited by Sebastian Heath Table of Contents Introduction Diversity within the set A Network Approach to Density Introduction roman-amphitheaters is a dataset published in conjunction with figures and discussion that has the goal of facilitating the study of amphitheaters in the Roman world. For the purposes of this...
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A repository listing Museums active on GitHub, written in Rstats Museums on Github This repository provides CSV raw data for museums active on Github. The following files are included from the GitHub api (accessed via authenticated requests): A list of museums with basic info A list of museum github api urls A list of museum extended github data (bio, repo numbers etc) To restore the repository download the bundle wget...
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Development version of the R package 'Luminescence' Luminesence The R package ‘Luminescence’ by the R-Luminescence Group provides acollection of various R functions for luminescence dating data analysis. Social media and other resources Follow us on or visit our R-Luminescence homepage . Installation i. Requirements Windows (32/64bit) : Rtools (providedby CRAN) macOS : Xcode (provided by Apple) Linux : gcc often comes pre-installed inmost distributions. ii. Install the package Install any...
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gargammel is an ancient DNA simulator gargammel: simulations of ancient DNA datasets gargammel is a set of programs aimed at simulating ancient DNA fragments. For ancient hominin samplesour program can also simulate various levels of present-day human contamination and microbial contamination. The website for gargammel can be found here: https://grenaud.github.io/gargammel/ Questions/bug report/feature requests : If you have Github account, consider creating an issue, you will help others who...
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R package for aoristic analysis aoristic The goal of aoristic is to make sense of temporally vague data. It cansometimes be difficult to ascertain when some events (such as propertycrime) occur because the victim is not present when the crime happens Asa result, police databases often record a start (or from ) date andtime, and an end (or to ) date and time. The start datetime usuallyreferences when the victim last saw their stolen property, and the to date-time records when they first...
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Detect and Parse Historic Dates in R unstruwwel Overview This R package provides means to detect and parse historic dates, e.g.,to ISO 8601:2-2019. It automatically converts language-specific verbalinformation, e.g., “circa 1st half of the 19th century,” into itsstandardized numerical counterparts, e.g., “1801-01-01\~/1850-12-31\~.”The package follows the recommendations of the MIDAS (MarburgerInformations-, Dokumentations- und Administrations-System), see, e.g.,...
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Extract text from sign board and tag as metadata signboardr Utilize Google Vision API to extract text from archaeological photos containing a sign board. Further, the extracted text can be added as searchable XMP metadata tags to photos. Installation You can install signboardr from github with: ``` r install.packages("devtools") devtools::install_github("mrecos/signboardr")``` Description This package is a thin wrapper around the RoogleVision package getGoogleVisionResponse...
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Pipelines and tools for the processing of ancient and modern HTS data. To restore the repository download the bundle wget https://archive.org/download/github.com-MikkelSchubert-paleomix_-_2021-06-18_21-33-17/MikkelSchubert-paleomix_-_2021-06-18_21-33-17.bundle and run: git clone MikkelSchubert-paleomix_-_2021-06-18_21-33-17.bundle Source: https://github.com/MikkelSchubert/paleomix Uploader: MikkelSchubert Upload date: 2021-06-18
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None BROWSER GIS COLLECTOR (10.11.2016) Aim Mobile-oriented browser based application that could be used for data collection Code Repository https://github.com/adammertel/simple-browser-gis-collector Live Example https://coffeegnome.net/geoloc/ will be moved to Univie server Conditions cross-platform - application should be functional within all the major platforms mobile-oriented - design and functionality is created mainly for mobile users offline functionality - application shoud work in...
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Methods for calibrating and analysing radiocarbon dates rcarbon This package enables the calibration and analysis of radiocarbon dates, often but not exclusively for the purposes of archaeological research. It includes functions not only for basic calibration, uncalibration, and plotting of one or more dates, but also a statistical framework for building demographic and related longitudinal inferences from aggregate radiocarbon date lists, including: Monte-Carlo simulation test (Timpson et al...
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Metadata scheme for National Register of Historic Places, transcribed from the National Park Service NPS Bulletin 16. National Register of Historic Places Metadata Scheme These tables represent portions of the metadata scheme for National Register of Historic Places, transcribed directly from the National Park Service National Register Bulletin 16 (Revised 1997). This repository is not the authoritative data source . Consult the National Park Service National Register Program for official...
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Experimenting with the opencontext.org API using R To restore the repository download the bundle wget https://archive.org/download/gist.github.com-50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57/50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57.bundle and run: git clone 50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57.bundle Source: https://gist.github.com/50aa4c39b7d955d0ec40 Uploader: benmarwick Upload date: 2016-09-16
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R package for extracting and analyzing grain sizes within R framework grainsizeR David Tavernini2017-02-12 Introduction This is a package developed by David Tavernini for a term project in GEOB 503. This package contains all the tools necessary to extract grain sizes from images, digitally sieve grain size measurements, and gather descriptive statistics on sieved data. For questions, comments, or issues please refer to the discussion tab or email me at taverninid@gmail.com . Requirements This...
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Android App for remotely controlling camera, weight scale and connecting to database for recording data on archaeology objects Archaeological Artifact Recording - Android App This Android app is designed to facilitate recording weights and colors stored in a Heroku database and downloading images of archaeological artifacts from a remote camera to the device's storage. The user can lookup an artifact by primary key(s)and retrieve all stored information about the object. The app can communicate...
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Forms for the Open Data Kit mobile data collection app ODK-forms-archaeology Forms for the Open Data Kit mobile data collection app These are a series of ODK forms I've created for my own archaeological field work. I provide them here, with no guarantees, warranties, support, or instructions, in case they may be useful for you. Most are provided in both the editable Excel spreadsheet form for use with xlsform , as well as the final XML for import into ODK or GeoODX. One or two may only have the...
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GIS Projects for teaching and learning about Computational Archaeology GIS-Projects GIS Projects for teaching and learning about Computational Archaeology Software needed: GRASS GIS QGIS GIMP Video Tutorials: These screen-cast video tutorials cover all the steps to complete the projects below. I include updated versions each year, as some of the details of the software tends to change, but the concepts and basic workflow should remain valid regardless of software version. Play list of 2018...
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Tools for Geometric Morphometrics. The package includes tools of Virtual Anthropology to build virtual cavities as endocasts, to align two disarticulated models belonging to the same specimen, and functions to import and export format files into another format. Arothron Tools for Geometric Morphometrics. The package includes tools of Virtual Anthropology to build virtual cavities as endocasts, to align two disarticulated models belonging to the same specimen, and functions to import and export...
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Write Graphviz dot files for archaeological sequence diagrams and Bayesian chronological models harris-matrix Write Graphviz dot files for archaeological sequence diagrams and Bayesian chronological models. See the documentation. To restore the repository download the bundle wget https://archive.org/download/github.com-tsdye-harris-matrix_-_2019-08-27_02-15-00/tsdye-harris-matrix_-_2019-08-27_02-15-00.bundle and run: git clone tsdye-harris-matrix_-_2019-08-27_02-15-00.bundle Source:...
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None Zooarchaeology is concerned with the analysis and inference of faunal remains recovered from archaeological sites. The zooaRchGUI package provides a Graphical User Interface (GUI) to analytical tools for zooarchaeological data in the R package. Functions in this package allow users to: input handle visualize and analyze zooarchaeological data Useful data are available with the package. After installing and starting zooaRchGUI, users will have access to these data. Most datasets are in...
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None ADMUR Ancient Demographic Modelling Using Radiocarbon Tools to directly model underlying population dynamics using chronological datasets (radiocarbon and other) with a variety of models, including Continuous Piecewise Linear (CPL) model framework. Optional taphonomy. Model comparison framework using BIC. Package also calibrates 14C samples, and generates Summed Probability Distributions (SPD). CPL modelling directly estimates the most likely population trajectory given a dataset, using...
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Colossal Cave Adventure digital palaeography and epigraphy project cca CCA Github ReadMeAndrew ReinhardJanuary 8, 2019 The files included in this repository and its subdirectories were either used or created by Andrew Reinhard in his Colossal Cave Adventure case study for the archaeology PhD at the University of York (UK). The goal of the case study was to determine if is possible to conduct stylometric and text analysis on game-code, and to see if any meaningful conclusions could be drawn from...
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OpenAtlas is an open source, web based database system for complex archaeological, historical and prosopographical data. About OpenAtlas is an open source, web based database system forcomplex archaeological, historical and prosopographical data. The information is mapped as a network using classes and properties of the CIDOC CRM . Documentation: Manual , Wiki , Issues Demo versions Demo with data kindly provided by the MEDCON project. Development demo with data kindly provided by the DPP...
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A LaTeX textbook devoted to explain how archaeologists can work with GRASS GIS grass-arch A LaTeX textbook devoted to explain how archaeologists can work with GRASS GIS.See the INSTALL.txt files for code issues. Slides The repository fradeve/slides contains slides from my talks about this project. See 2011 gnuarch grass . To restore the repository download the bundle wget...
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Maya Calendar Tools Tools for converting between Maya and Western calendars. The Classic Maya developed the most sophisticated system for keeping track of time in the New World. In this app, you can convert dates from the Maya Calendar (Long Count and Calendar Round) to the Gregorian or Julian Calendars and vice-versa. You can also check the Maya glyphs for the current date. More features will be added in future versions. Go to Web App To restore the repository download the bundle wget...
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Analysis of spatial gradients in radiocarbon dates spDates Analysis of Spatial Gradients in Radiocarbon Dates Jonas Gregorio de Souza jonas.gregorio@gmail.com Tools to perform time-space regressions, an approach often used by archaeologists examining the expansion of cultural phenomena. In essence, one plots the radiocarbon ages of archaeological sites against their distances from a hypothetical origin. If a cultural advance has indeed taken place, the expectation is that radiocarbon dates will...
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Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases provides functions for the statistical analysis of archaeological dates and groups of dates. It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior...
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known pyramids of Ancient Egypt using python + OpenStreetMap OpenStreetMap of Pyramids of Ancient Egypt Man fears time, but time fears the Pyramids. Probably all of you saw maps of Ancient Egyptian sites (I had school workbook) in stylized way like this below: I wished to recreate this kind of map using Python and OpenStreetMap but the problem I faced was the absolute absence of some dataset or even list with coordinates of egyptian pyramids. So I took different historical sources, Google Maps,...
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:bar_chart: Analysis, Seriation and Visualization of Archaeological Count Data tabula Overview An easy way to examine archaeological count data. This package providesa convenient and reproducible toolkit for relative and absolute datingand analysis of (chronological) patterns. It includes functions formatrix seriation (reciprocal ranking, CA-based seriation), chronologicalmodeling and dating of archaeological assemblages and/or objects. Beyondthese, the package provides several tests and...
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Chrono-spatial modelling of settlement activities Example code for the paper "Modelling prehistoric settlement activities based on surface and subsurface surveys" by D. Dreslerová and P. Demján Author of the code: Peter Demján (peter.demjan@gmail.com) Institute of Archaeology of the Czech Academy of Sciences, Prague, v.v.i. Overview This is an example implementation of chrono-spatial modelling of settlement activities used in the aforementioned paper. The purpose is to provide a...
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