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Management system for physical storage of archaeological finds (ARCHIVED) To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-nervia_-_2020-06-22_07-37-06/steko-nervia_-_2020-06-22_07-37-06.bundle and run: git clone steko-nervia_-_2020-06-22_07-37-06.bundle Source: https://codeberg.org/steko/nervia Uploader: steko Upload date: 2020-06-22
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open-archaeo
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Map of the Roman Empire made with vector tiles Roman Empire Roman Empire Map made with vector tiles :globe with meridians: Browse the map Edit online Blog posts: http://commons.pelagios.org/2017/11/building-the-roman-empire-vector-tile-map/ http://commons.pelagios.org/2017/09/rdg-update-the-roman-empire-vector-map-project/ More information at: Source: Digital Atlas of the Roman Empire Further information at OpenMapTiles.org To restore the repository download the bundle wget...
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open-archaeo
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R Package - Quantitative Analysis in Archaeology quantAAR quantAAR contains tidy wrappers and useful utility function for common applications of exploratory statistics in archaeology: Wrapper functions: Correspondence Analysis : ca.ca_ca ( ca::ca ), ca.vegan_cca ( vegan::cca ) Principal Components Analysis : pca.stats_prcomp ( stats::prcomp ), pca.vegan_rda ( vegan::rda ) Seriation : seriation.seriation_seriate ( seriation::seriate ), seriation.tabula_seriate ( tabula::seriate ) Principal...
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open-archaeo
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Bindings to the tDAR API tdar This package allows programmatic access to the Digital ArchaeologicalRecord (tDAR) , a service of DigitalAntiquity . Installation You can install tdar from github with: # install.packages("devtools")devtools::install_github("bocinsky/tdar") Please note that this project is released with a Contributor Code ofConduct . By participating in this project you agree toabide by its terms. Basic usage Authentication tDAR authentication is handled through...
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open-archaeo
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Collection of 250+ datasets for photogrammetry Photogrammetry Datasets This is a collection of datasets for photogrammetry. A csv-table with 350+ datasets can be downloaded from this repository: datasets.csv . Contents Dataset,Camera,Category,Author,Organisation/Project,Source,Dataset link,Images,Size in GB,Ground Truth,License,License link,SampleImage,Image Format,DOI,Masks,Description The list includes a large variety of image sets and sizes.From small (
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open-archaeo
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Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data cranial-sex-estimation-code Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data To reimplement the analysis grab the morphometric feature dataset from https://zenodo.org/record/3632180 and save the relevant files into the corresponding folders. Keep the current directory structure and from within GNU Octave command window enter the ./analysis...
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open-archaeo
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CharTool is a macro tool for quantifying charcoal particles for paleoecological research applications. The Charcoal Quantification Tool (CharTool): A suite of open-source tools for quantifying charcoal fragments in archaeological and paleoecological analysis 2020 CharTool is a suite of macro tools for quantifying charcoal fragment metrics and sediment attributes in archaeological, paleoecological, and paleo-fire science contexts. This folder contains ImageJ version 1.52 with CharTool installed...
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open-archaeo
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Piwigo plugin for viewing 3D models using 3DHOP piwigo-3dhop piwigo-3dhop is a plugin for Piwigo that allows 3D models to be added to galleries and viewed using 3DHOP . 3DHOP currently supports models in .ply and .nxs format. Other files may be added to Piwigo using the "multiple formats" functionality but cannot be viewed directly. Installation From Piwigo The easiest way to install the plugin is from within Piwigo. Search for '3dhop' in the plugin manager, click 'install', and then...
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open-archaeo
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Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology AtlantGIS Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology. All AtlantGIS data are published under a CC-BY-SA 4.0 license. The idea is to create artificial data creatively referring to the story of Atlantis as told by Platon.We believe that simple datasets with a narrative are most qualified to impart knowledge and skills to...
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open-archaeo
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The Southwest Taphonomic Protocol swtp This repository contains the data and code for our paper: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). The Southwestern Taphonomic Protocol . In review. How to cite Please cite this compendium as: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). Compendium of R code and data for ‘The Southwestern Taphonomic Protocol’ . Accessed 10 Dec 2020. Contents The :file_folder: paper directory contains:...
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open-archaeo
software

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Manuals for total stations total-station-manuals Manuals for total stations To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-total-station-manuals_-_2020-04-18_22-50-09/steko-total-station-manuals_-_2020-04-18_22-50-09.bundle and run: git clone steko-total-station-manuals_-_2020-04-18_22-50-09.bundle Source: https://codeberg.org/steko/total-station-manuals Uploader: steko Upload date: 2020-04-18
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open-archaeo
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skyscapeR: an R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. skyscapeR skyscapeR is a open source R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. It is intended to become a fully-fledged, transparent and peer-reviewed package offering a robust set of quantitative methods while retaining simplicity of use. For information on how to use skyscapeR...
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open-archaeo
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Interchange Tools for Multi-Parameter Spatiotemporal Data mudata2 The mudata2 package provides tools to read, write, and documentmulti-parameter spatiotemporal data. Installation You can install mudata2 from CRAN with: rinstall.packages("mudata2") Or alternatively, you can the development version from github with: ``` r install.packages("remotes") remotes::install_github("paleolimbot/mudata")``` What is mudata? The mudataformat is adata table in a specific form,...
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open-archaeo
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Yet Another Demographic Analysis package yada yada , which stands for Yet Another Demographic Analysis package,supports a variety of demographic tasks, with most applications drawnfrom forensic anthroplogy and archaeology. Installation You can install yada with: rdevtools::install_github("eehh-stanford/yada") Contributing Please note that the ‘yada’ project is released with a Contributor Codeof Conduct . By contributing to thisproject, you agree to abide by its terms. To restore...
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open-archaeo
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paleofire package paleofire paleofire: an R package to analyse sedimentary charcoal records from the Global Charcoal Database to reconstruct past biomass burning The paleofire package provides tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database (see http://gpwg.paleofire.org for details). Main functionalities includes data extraction and sites selection, transformation and homogenization of the charcoal records as well as regional to global compositing....
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open-archaeo
software

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An R package for the extraction, analysis and classification of (not only) archaeological objects from scanned images shapAAR This is an R package for the extraction, analysis and classification of (not only) archaeological objects derived from scanned images. Especially it aims at the analysis of the shapes/profiles of eg. ceramic vessels or arrow heads. Currently the extraction is implemented using active contour to identify and extract the shape informations. You can get an idea about its...
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open-archaeo
software

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None Introduction to Analysing Archaeological Radiocabon Ages Using R Ben Marwick, July 2020 Overview In this workshop we will practice some techniques for analysingarchaeological radiocabon ages using R. Here are the slides . Here’s the outline of keytopics: Calibrate and plot a single age Calibrate and plot multiple ages Combine and plot multiple ages using non-parametric phase estimation Age-depth modelling Summed probability density plots Hypothesis testing with SPDs You can download the...
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open-archaeo
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None AuthentiCT is a command-line tool to estimate the proportion of present-day DNA contamination in ancient DNA datasets generated from single-stranded libraries.It estimates contamination using an ancient DNA damage model and assumes that the contaminant is not deaminated. Installation: AuthentiCT requires Python 3.6+ and relies on a number of non-standard libraries. Here is the list of these dependencies with the versions that we used:- numpy (version 1.17.3)- numdifftools (version 0.9.39)-...
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open-archaeo
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A dataset and discussion relating to Roman amphitheaters Most recent draft release: Permanent DOI for link to all versions: https://doi.org/10.5281/zenodo.596149 roman-amphitheaters Edited by Sebastian Heath Table of Contents Introduction Diversity within the set A Network Approach to Density Introduction roman-amphitheaters is a dataset published in conjunction with figures and discussion that has the goal of facilitating the study of amphitheaters in the Roman world. For the purposes of this...
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open-archaeo
software

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You have a sequence of numbered items and want to check if any are missing, which ones, how many gaps are found in the sequence, etc. missing You have a sequence of numbered items and want to check if any are missing,which ones, how many gaps are found in the sequence, etc. You're probably dealing with a museum inventory, an old paper log, anhistorical archive and you just can't get rid of those numbers (perhapsbecause there are cultural artifacts that have been marked with thosenumbers as...
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open-archaeo
software

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R and Stan code for fitting geographic models of artifact class diversity. Artifact Class Diversity This project contains R (www.r-project.org) and Stan (www.mc-stan.org) scripts that estimate artifact class diversity in multiple geographic regions. Point Diversity.R This script requires two csv files: geogdata.csv and point data.csv . The former csv file contains a row for every administrative unit under consideration (e.g., counties, states), with the first column consisting of unique...
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open-archaeo
software

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A git mirror of the tridas SVN repository from https://sourceforge.net/projects/tridas/ To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-tridas_-_2020-02-10_16-10-11/steko-tridas_-_2020-02-10_16-10-11.bundle and run: git clone steko-tridas_-_2020-02-10_16-10-11.bundle Source: https://codeberg.org/steko/tridas Uploader: steko Upload date: 2020-02-10
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open-archaeo
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None predictSource The package predictSource provides functions to verify that data can beused to separate sources of samples, to predict the sources ofadditional samples, and to create plots that evaluate the validity ofthe predictions. Data can be both quantitative and qualitative. Aproposed analysis strategy is to use random forests to evaluate whetherthe data can separate the sources and to identify the most importantpredictors if there are many, use a classification tree to understandhow...
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open-archaeo
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downloads and prepares shkr data for analysis shkrdata Package for downloading and preparing shkr data for archaeological analysis. The database contains archaeological information from the Early Iron Age in South-West Germany. This package is intended to simplify the data access as well as some basic steps of the preparation of the data. For this purpose shkrdata comprises function for accessing the data as well as function wrapping functionality from our package moin...
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Joint estimate of demography and contamination for nuclear ancient DNA Readme for DICE DICE is a Bayesian method to jointly estimate error rates, demographic parameters and the rate of contamination from present-day humans in ancient DNA (aDNA) samples from modern or archaic humans. Our approach is based on an MCMC sampler, and is applicable to nuclear autosomal aDNA data. It can also serve to infer the most probable ancestry of the individual(s) that contaminated the sample. Contact Fernando...
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open-archaeo
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Total Open Station downloads and exports survey data from your total station To restore the repository download the bundle wget https://archive.org/download/github.com-steko-totalopenstation_-_2020-11-18_11-12-29/steko-totalopenstation_-_2020-11-18_11-12-29.bundle and run: git clone steko-totalopenstation_-_2020-11-18_11-12-29.bundle Source: https://github.com/steko/totalopenstation Uploader: steko Upload date: 2020-11-18
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open-archaeo
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A collection of time-stratigraphic publications Strativerse (source) This is the source of the Strativerse , as a Hugo site. Changes to this repository areautomatically synced to https://strativerse.org using Netlify . If you are interested in contributing, Isuggest opening anissue . Youcan browse the Strativerse at https://strativerse.org/ , or clone thisrepository, open in RStudio and use thehacked-together R toolbox to work with objects in tabular form. ``` r these functions are in the...
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open-archaeo
software

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None survey2gis It is a little tool that can process survey data, suchas produced by a GPS or total station, and export it as topologicallycleaned data fit for use in GIS. For more information, seehttp://survey-tools.org and the user manual that came withthis software. Important links Official Website: http://survey-tools.org.Bugtracker: https://github.com/survey2gis/survey-tools/issuesMailinglist: https://groups.io/g/survey2gis/topics FAQs How do I install this software? Look into the folder...
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open-archaeo
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Skullanalyzer: a concrete way of extracting cranial morphometric features skullanalyzer a concrete way of extracting cranial mophometric features The skullanalyzer loads a 3D triangular mesh cranial model along with a number of user defined landmarks and extracts a set of cranial morphometric features, which can be used for further analyses. It requires two input files, one Alias Wavefront file (model name.obj) containing a triangular mesh of the cranial model to be analyzed and a Meshlab...
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Exchange data format (XML) for NoNeK (Nordmitteleuropäische Neolithische Keramik) nonekXML In order to simplify an exchange of data included in NoNeK (Nordmitteleuropäische Neolithische Keramik), an XML schema for this purpose is presented here(http://www.uf.uni-erlangen.de/projekte-der-juengeren-urgeschichte/nonek-nordmitteleuropaeische-neolithische-keramik/) To restore the repository download the bundle wget...
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A simple html5 canvas game inspired by the research project of historiography of ancient Graeco-Roman religions GODS ON THE BARGE game CURRENT VERSION ROADMAP We are working on bugs and lot of ideas are still waiting for implementation.Uploaded 0.2beta version could be found on http://gehir.phil.muni.cz/godsonthebarge/. Version 0.2 [x] graphic design of icons [x] simple buildings system [x] simple events system [x] active abilities of cults [x] rebalancing the economic model [x] implementation...
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open-archaeo
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an app to collect data on archaeological objects - this is the service side Archaeology Service: Contains Python scripts for retrieving and sending information to a database.You will need to create a Heroku webapp to host the service onto. Dependencies You will need the following installed on your machine:- Python 3.6+ (preferably the newest version in case dependencies become depricated)- PostgreSQL- pip Heroku - Running Locally Make sure you have Python installed properly...
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ggplot-based plots for vegan ggvegan; ggplot2-based plots for vegan What is ggvegan? ggvegan is a package for the R statistical software and environment. It aims to implement ggplot -based versions of the plots produced by the vegan package. Initially, ggvegan will provide fortify and autoplot methods for objects created in vegan, with the aim of providing full replacement plots via autoplot . The fortify methods allow the data contained within objects created by vegan to be converted into a...
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open-archaeo
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Digitize archeological drawings of vessels in order to calculate their capacity and weight VMT - Vessel Measuring Tool This is a simple webapp written in javascript using ReactJs Framework.It can be used to digitize archeological drawings of vessels in order to calculate their capacity and weight. Try it at this link How does it work? You can watch this youtube video that show how to use this app. If you have problems you can contact me or open an issue on github. How to run Clone or download...
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open-archaeo
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R Package for sourcing elements elemSource R Package for sourcing elements Warning: Currently in development: Only works with obsidian data calibrated by Bruker software with data formatted with the artifact/source in the first column the 10 elements from the calibration in the next columns, the source (site name or obsidian source) in the next column, andthe type in the next column (can only be 'Source' or 'Artifact). Example Install Two packages must be installed prior to installing...
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Python implementation for https://github.com/ISAAKiel/postAAR postAAR-python Python Implementation for https://github.com/ISAAKiel/postAAR Current algorithm for finding rectangles Previous algorithm for finding rectangles Commit https://github.com/ISAAKiel/postAAR-python/commit/b914c0a86412de4d88c57111c344c41d3f9503ff and before To restore the repository download the bundle wget...
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open-archaeo
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Code for paper: "3D Reconstruction of Incomplete Archaeological Objects Using a Generative Adversarial Network" 3D-ORGAN 3D Object Reconstruction Generative Adversarial Network Code for paper "3D Reconstruction of Incomplete Archaeological Objects Using a Generative Adversarial Network" [arxiv] . Citation Please use the following bibtex entry: bibtex@inproceedings{10.1145/3208159.3208173,author = {Hermoza, Renato and Sipiran, Ivan},title = {3D Reconstruction of Incomplete...
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open-archaeo
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R Package - 3D Reconstruction of Archaeological Excavations recexcavAAR R package for 3D reconstruction and analysis of excavations. It provides methods to reconstruct natural and artificial surfaces based on field measurements. This allows to spatially contextualize documented subunits and features. Intended to be part of a 3D visualization workflow. The following vignettes explain some of the implemented functions: >>Semiautomatic spit attribution < < >>Trench visualisation...
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open-archaeo
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Fix the Exif.Image.Artist tag based on user input depending from the camera model. Useful if you have a bunch of photographs from different people all mixed up. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-fix-exif-artist_-_2020-03-25_20-46-58/steko-fix-exif-artist_-_2020-03-25_20-46-58.bundle and run: git clone steko-fix-exif-artist_-_2020-03-25_20-46-58.bundle Source: https://codeberg.org/steko/fix-exif-artist Uploader: steko Upload date:...
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Geometrical 2D analysis of archaeological walls. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-murature_-_2020-06-22_14-12-21/steko-murature_-_2020-06-22_14-12-21.bundle and run: git clone steko-murature_-_2020-06-22_14-12-21.bundle Source: https://codeberg.org/steko/murature Uploader: steko Upload date: 2020-06-22
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PaleoView is a visualization tool for paleoclimatic modeling data. To restore the repository download the bundle wget https://archive.org/download/github.com-GlobalEcologyLab-PaleoView_-_2020-03-06_02-42-12/GlobalEcologyLab-PaleoView_-_2020-03-06_02-42-12.bundle and run: git clone GlobalEcologyLab-PaleoView_-_2020-03-06_02-42-12.bundle Source: https://github.com/GlobalEcologyLab/PaleoView Uploader: GlobalEcologyLab Upload date: 2020-03-06
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Coprolite host Identification A fully reproducible pipeline for COPROlite and paleofeces host IDentification CoproID helps you to identify the "true maker" of Illumina sequenced Coprolites/Paleofaeces by checking the microbiome composition and the endogenous DNA. It combines the analysis of putative host ancient DNA with a machine learning prediction of the feces source based on microbiome taxonomic composition: ( A ) First coproID performs a comparative mapping of all reads agains...
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open-archaeo
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None An Archaeology Stop Motion Movie Festival! April 5 - 30th, with winners revealed May 4th. Let's have a movie festival. Also, I like stop-motion films - y'know, like the Wallace and Gromit films. So here's what you do - How? Make a stop motion film on one of the following themes: a. archaeological theory b. history of archaeology c. the story of a site d. the story of a dig e. the biography of an object Make it two minutes in length Can be lego, clay, paper cut outs, whatever you like...
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The Soil Texture Wizard (R package soiltexture) Linux: . Windows: Official package release on CRAN: https://cran.r-project.org/package=soiltexture soiltexture Homepage of the soiltexture R package. The package repositry was recently moved from rforge to GitHub . Original pages: https://r-forge.r-project.org/R/?group_id=740 http://soiltexture.r-forge.r-project.org/ This page is under construction. Please refer to the old homepage for more information. Installation: Official release on CRAN...
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An R package for Smith's Mean Measure of Divergence (MMD), with a graphical user interface, facilities for trait selection and graphical representations. AnthropMMD AnthropMMD is an R package for an easy calculation of the mean measure of divergence (MMD). It offers both a graphical user interface (for scientists who are not R programmers), and a set of functions which can be used through the command line interface (for reproducible research or scientists who are already familiar with R). For...
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Analogue and weighted averaging methods for palaeoecology analogue Released version Build status | Linux | Windows | Codecov || ----- | ------- | ------- || | | | What is analogue? analogue is an R package for use with palaeoecological data. Originally, analogue was intended as an R implementation of analogue methods such as analogue matching, ROC curves, and MAT transfer function models, and the computation of dissimilarity coefficients. Since then the scope of the package has grown to include...
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Tidy tools for paleoenvironmental archives tidypaleo Working with multi-proxy paleo-archive data can be difficult. There aremultiple locations, multiple parameters, and a lot ofdiscipline-specific norms for plot layout and notation. This packagesimplifies a few workflows to promote the use of R for reproducibledocuments in paleo-based studies. Installation You can install tidypaleo from GitHub with: ``` r install.packages("remotes")...
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R package for the analysis of the fragmentation of archeological objects Archeofrag an R package for refitting and stratigraphic analysis in archeology Installation Archeofrag reference version can be installed from CRAN with: rinstall.packages("archeofrag") Alternatively, the development version, which includes the last changes and fixes, can be installed from GitHub with: ```r install.packages("devtools")...
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R Package - Reconstruct Paths using Archaeological Monuments & Model Parameters of Infrastructure pathAAR R Package to reconstruct paths using archaeological monuments, model parameters of infrastructure and evaluate those parameters Archaeological remains of roads or infrastructure are rarely found, especially in earlier epochs. Usually, most premodern paths have been country lanes, which might be paved when needed. Hence, their preservation is linked to specific conditions, like...
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Scripts to create QR-Code images for storage boxes. Each box has an associated web page describing its content, and the QR-Code serves as a short-link from the physical object to the web page. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-qrcode-storage_-_2020-06-22_14-11-12/steko-qrcode-storage_-_2020-06-22_14-11-12.bundle and run: git clone steko-qrcode-storage_-_2020-06-22_14-11-12.bundle Source: https://codeberg.org/steko/qrcode-storage...
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None MultiVCFAnalyzer Table of Contents Description Citation Usage Example Output FAQs Description MultiVCFAnalyzer is a SNP filtering and SNP alignment generation tool, designed around (but not limited to) low coverage ancient DNA data. MultiVCFanalyzer reads multiple VCF files as produced by GATK UnifiedGenotyper, performs filtering based on a number of criteria, and provides the combined genotype calls in a number of formats that are suitable for follow-up analyses such as phylogenetic...
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Radiocarbon Dating Resolution Calculator Res14C Radiocarbon Dating Resolution Calculator Overview A python implementation of the method of calculating radiocarbon dating resolution. For an overview of the method see: Svetlik, I., A. J. T. Jull, M. Molnár, P. P. Povinec, T. Kolář, P. Demján, K. Pachnerova Brabcova, et al. “The Best Possible Time Resolution: How Precise Could a Radiocarbon Dating Method Be?” Radiocarbon 61, no. 6 (December 2019): 1729–40....
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Room Accumulation Simulation ro estimate archaeological population growth rates ReadMe.txt Documentation provided in RoomAccumDocumentation.pdf Licence provided in License.txt Source code RoomAccumXX.dpr Program Source Code KWKStdXE.pas Utility functions called by the program Compiled Windows version RoomAccumXX.exe
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Interface for 14C-Database CalPal CalPal-Database CalPal 14C-Database created by Bernhard Weninger (Universität zu Köln) as part of the CalPal software package. This repository serves as an interface to access the data more easily. To restore the repository download the bundle wget https://archive.org/download/github.com-nevrome-CalPal-Database_-_2020-08-30_12-27-59/nevrome-CalPal-Database_-_2020-08-30_12-27-59.bundle and run: git clone nevrome-CalPal-Database_-_2020-08-30_12-27-59.bundle...
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open-archaeo
software

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A tool for creating and manipulating Harris Matrices, part of the Archaeological Recording Kit (ARK) by L ~ P : Archaeology ARK Matrix A tool for creating and manipulating Harris Matrices.Part of the Archaeological Recording Kit by L-P : Archaeology http://ark.lparchaeology.com NOTE: Primary development occurs on GitLab at https://gitlab.com/arklab/ArkMatrix . This repo is mirrored on GitHub for legacy links only. Features The following features are currently supported by the command line tool...
Topics: GitLab, code, software, git
open-archaeo
by stefanieschneider
software

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An Online Tool for the Comparative Analysis of Museum Databases MAX – Museum Analytics Overview In recent years, large museum databases have been created in the international museum sector that are awaiting meaningful use. They offer a hitherto unknown opportunity for empirical investigation of the history of collections, which can be expected to yield far-reaching results, especially in a comparative perspective. Museum Analytics , MAX , is intended to enable lecturers to import freely...
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open-archaeo
software

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Peer reviewed and indexed articles published on Caddo archaeology since 2000. caddonet Peer reviewed and indexed articles published on Caddo archaeology since 2000. To restore the repository download the bundle wget https://archive.org/download/github.com-aksel-blaise-caddonet_-_2020-04-03_11-10-46/aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle and run: git clone aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle Source: https://github.com/aksel-blaise/caddonet Uploader: aksel-blaise Upload...
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open-archaeo
software

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Clustering of calibrated radiocarbon dates Clustering of calibrated radiocarbon dates Overview A python implementation of the method of clustering radiocarbon dates in order to determine whether they represent separate events, or phases in time. For an overview of the method see: [upcoming paper] Demján, P., Pavúk, P. Clustering of calibrated radiocarbon dates: Site-specific chronological sequences identified by dense radiocarbon sampling. How to run Find optimal number of clusters: python...
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open-archaeo
software

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None opencontext: An R API client for the Open Context archaeological data repository This packages enables browsing and downloading data from Open Context using R. Open Context reviews, edits, and publishes archaeological research data and archives data with university-backed repositories, including the California Digital Library. Installation Install opencontext rinstall.packages("devtools")devtools::install_github("ropensci/opencontext") rlibrary("opencontext")...
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open-archaeo
software

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A set of best practices, how-tos and implementations for publishing pottery drawings on the Web as SVG To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-svg-pottery_-_2020-04-05_22-34-18/steko-svg-pottery_-_2020-04-05_22-34-18.bundle and run: git clone steko-svg-pottery_-_2020-04-05_22-34-18.bundle Source: https://codeberg.org/steko/svg-pottery Uploader: steko Upload date: 2020-04-05
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open-archaeo
software

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An Approximate Bayesian Computation Framework for inferring patterns of cultural transmission from frequency data cTransmission An Approximate Bayesian Computation Framework for inferring patterns of cultural transmission from frequency data To restore the repository download the bundle wget https://archive.org/download/github.com-ercrema-cTransmission_-_2020-05-14_17-43-37/ercrema-cTransmission_-_2020-05-14_17-43-37.bundle and run: git clone ercrema-cTransmission_-_2020-05-14_17-43-37.bundle...
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open-archaeo
software

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R Package - Aoristic analysis of archaeological data aoristAAR A R package for the aoristic analysis of archaeological data Installation aoristAAR is currently not on CRAN , but you can use devtools to install the development version. To do so: if(!require('devtools')) install.packages('devtools')library(devtools)install_github('ISAAKiel/aoristAAR') Licence aoristAAR is released under the GNU General Public Licence, version 3 . Comments and feedback are welcome, as are code contributions. To...
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open-archaeo
software

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Datasets from studies of cultural evolution in Archaeology evoarchdata The goal of evoarchdata is to make easily available some importantartefact datasets from archaeological studies of cultural evolution. Themotivation for this package is to make it easier to teach and studycultural evolution in the archaeological record. Installation You can install the development version of evoarchdata from GitHub with: rif (!require(devtools))...
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open-archaeo
software

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Evidence Density Estimation (EDE) interpolation of archaeological settlement data EDE Interpolation A QGIS 3 plugin for spatio-temporal interpolation of archaeological settlement evidence. Created on 21.4.2019 Evidence Density Estimation (EDE) interpolation of archaeological settlement data. Produces spatio-temporal distribution maps or summed distributions representing intensity of settlement activities within the examined area in different time periods. Uses radiocarbon-dated as well as...
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open-archaeo
software

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A Data Package specification for archaeological stratigraphy data following the Harris Matrix convention. Harris Matrix Data Package This repository contains archaeological stratigraphic datasets in CSVformat, following the table schema developed by Thomas S. Dye for the hm Lisp package ,together with a Python command-line tool that can check consistency ofdata with the format. Each dataset contains various tables and a data package descriptor( datapackage.json ) that enables consistency checks...
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open-archaeo
software

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None DamMet, a full probabilistic model for mapping ancient methylomes DamMet is probabilistic model for mapping ancient methylomes using sequencing data underlying an ancient specimen.The model is implemented as a two step procedure. The first step recovers a maximum likelihood estimate (MLE) of the position specific deamination rates for methylated and unmethylated cytosine residues. The second step, making use of these deamination rates, returns a MLE of the methylation level in a...
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open-archaeo
software

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An App to recognize cuneiform characters on your Android phone CuneiPainter An App to recognize cuneiform characters on your Android phone CuneiPainter enables you to paint cuneiform characters using your fingers on the touchscreen of your smartphone.The app recognizes the four stroke types of cuneiform as defined by the Gottstein System :* left to right (A)* up to down (B)* down right to up left (C)* down left to up right (D) Wedges are recognized as class C and not as class E as also...
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open-archaeo
software

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Small command line tool for 14C calibration calibrator Calibrator is a small c++ command line tool to calibrate 14C dates. In can process inputs in csv, json or as cli parameters, and it outputs csv or json, that can be piped into a file. Usage Allowed arguments: -h [ --help ] Produce this help message. -i [ --input-file ] arg Specifies input file. -b [ --bp ] arg The BP Value. -s [ --std ] arg The standard deviation. -j [ --json-string ] arg Input as as JSON string. Format: {"bp":...
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open-archaeo
software

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A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs. Sex.DetERRmine A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs. Mathematical equations added to README using this tool . Instructions The python script takes a modified output from samtools depth as input, via stdin. The samtools depth file...
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open-archaeo
software

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Learn Git and Contribute to Texas Archaeology Git-to-the-Point: Learn Git and Contribute to Texas Archaeology Contributors: Robert Z. Selden, Jr.; Juanita D. Garcia; and David Foxe Diagnostic artifacts comprise the basis for archaeological interpretations; however, as our taxonomic definitions evolve, artifacts that were previously assigned to a type generally retain that designation, potentially confounding future research efforts and interpretations. For this exercise, the original type...
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open-archaeo
software

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Kotyle is a software program for calculating the capacity of a ceramic vessel, like an amphora. The main use of Kotyle is for artifacts studied by archaeologists. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-kotyle_-_2020-06-23_23-00-02/steko-kotyle_-_2020-06-23_23-00-02.bundle and run: git clone steko-kotyle_-_2020-06-23_23-00-02.bundle Source: https://codeberg.org/steko/kotyle Uploader: steko Upload date: 2020-06-23
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open-archaeo
software

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Backend for one of the largest 14C-Database online. radon Backend for one of the largest 14C-Database online. The real RADON You can see a running version of the application at http://radon.ufg.uni-kiel.de/ . Installation This application is set up to use SQLite by default. Feel free to deploy it with another database system of your choice by altering the database.yml git clone git://github.com/ISAAKiel/radon.gitcd radonbundle installbundle exec rake db:setup Optional If you want to populate...
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open-archaeo
software

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Arran: a benchmark dataset for automated detection of archaeological sites on LiDAR data Arran Arran: a benchmark dataset for automated detection of archaeological sites on LiDAR data The benchmark dataset will be publically available from early 2020. To restore the repository download the bundle wget https://archive.org/download/github.com-ickramer-Arran_-_2020-01-09_19-22-36/ickramer-Arran_-_2020-01-09_19-22-36.bundle and run: git clone ickramer-Arran_-_2020-01-09_19-22-36.bundle Source:...
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open-archaeo
software

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A workflow for integrating ancient lineages into present-day phylogenies. pathPhynder A workflow for ancient DNA placement into reference phylogenies. Description: Ancient DNA data is characterized by deamination and low-coverage sequencing, which results in a high fraction of missing data and erroneous calls. These factors affect the estimation of phylogenetic trees with modern and ancient DNA, especially when dealing with many ancient samples sequenced to lower coverage. Furthermore, most...
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open-archaeo
software

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known pyramids of Ancient Egypt using python + OpenStreetMap OpenStreetMap of Pyramids of Ancient Egypt Man fears time, but time fears the Pyramids. Probably all of you saw maps of Ancient Egyptian sites (I had school workbook) in stylized way like this below: I wished to recreate this kind of map using Python and OpenStreetMap but the problem I faced was the absolute absence of some dataset or even list with coordinates of egyptian pyramids. So I took different historical sources, Google Maps,...
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open-archaeo
software

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Global Charcoal Database To restore the repository download the bundle wget https://archive.org/download/github.com-oblarquez-GCD_-_2020-10-26_18-54-03/oblarquez-GCD_-_2020-10-26_18-54-03.bundle and run: git clone oblarquez-GCD_-_2020-10-26_18-54-03.bundle Source: https://github.com/oblarquez/GCD Uploader: oblarquez Upload date: 2020-10-26
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open-archaeo
software

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Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases provides functions for the statistical analysis of archaeological dates and groups of dates. It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior...
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open-archaeo
software

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These scrapers, when ready, will make it possible to aggregate severalexisting databases into one (giant) metadatabase of radiocarbon dates. They're written in Javascript with Node.js and the scraperjs library. You can do cool stuff with many thousand radiocarbon dates: Reconstructing regional population fluctuations in the European Neolithic using radiocarbon dates: a new case-study using an improved method To restore the repository download the bundle wget...
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open-archaeo
software

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Using R with wikipedia for various things To restore the repository download the bundle wget https://archive.org/download/gist.github.com-ac394fd61f481393b0ae_-_2020-06-14_18-15-41/ac394fd61f481393b0ae_-_2020-06-14_18-15-41.bundle and run: git clone ac394fd61f481393b0ae_-_2020-06-14_18-15-41.bundle Source: https://gist.github.com/ac394fd61f481393b0ae Uploader: benmarwick Upload date: 2020-06-14
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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Programmatic R interface to the Neotoma Paleoecological Database. neotoma NOTE The Neotoma R package accesses the Windows-based API for the database. This API is being deprecated, but is still available. Due to changes in the database servers, the API Help is no longer functioning. Links to API help have been left, but do not resolve. The neotoma package is a programmatic R interface to the Neotoma Paleoecological Database . The package is intended to both allow users to search for sites and to...
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open-archaeo
software

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A GNU Octave function for estimating sex from bones of the lower and upper limbs skeletal-sex-estimation A GNU Octave function for skeletal sex estimation The function estimate_sex provides a graphical user interface for estimating sex from various sleletal elements according to the selected classifier saved in the respective .mat files. The required classifier file can be parsed as an input argument to the function or it can be selected through the open file dialog when the function is called...
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open-archaeo
software

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Tools for Quantitative Archaeology – in R. A list of R equivalents of TFQA (http://tfqa.com) programs. Tools for Quantitative Archaeology – in R 2020-11-06 Tools for Quantitative Archaeology (TFQA) is acollection of DOS programs developed by Keith Kintigh to performstatistical analyses used in archaeology. TFQA includes 50 programs andso gives a good representation of the range of analyses used byarchaeologists. The purpose of this document is to track which of theseanalyses are currently...
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open-archaeo
software

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Tools for osteometric sorting of human remains osteometric-sorting Tools for osteometric sorting of human remains To restore the repository download the bundle wget https://archive.org/download/github.com-pr0m1th3as-osteometric-sorting_-_2020-05-09_00-52-46/pr0m1th3as-osteometric-sorting_-_2020-05-09_00-52-46.bundle and run: git clone pr0m1th3as-osteometric-sorting_-_2020-05-09_00-52-46.bundle Source: https://github.com/pr0m1th3as/osteometric-sorting Uploader: pr0m1th3as Upload date: 2020-05-09
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open-archaeo
software

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XRF tools for R xrftools The goal of xrftools is to provide tools to read, plot, and interpretX-Ray fluorescence spectra. Installation You can install xrftools from github with: ``` r install.packages("remotes") remotes::install_github("paleolimbot/xrftools")``` Example Read in a Panalytical XRF spectrum and plot it. ``` rlibrary(tidyverse)library(xrftools) > > Attaching package: 'xrftools' > The following object is masked from 'package:stats': > > filter pan...
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open-archaeo
software

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A tool for measuring tree-ring width MtreeRing Authors: Jingning Shi , Wei Xiang License: GPL3 MtreeRing is a tool for automatically measuring tree-ring width using image processing techniques. Installation Install the stable version from CRAN rinstall.packages("MtreeRing") or the development version from GitHub ```r install.packages("devtools") devtools::install_github("ropensci/MtreeRing")``` Ring-width measurement 1. Read an image ```rlibrary(MtreeRing) Read and...
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open-archaeo
software

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None epiPALEOMIX Pipeline Recently moved from BITBUCKET. A Fast, Accurate, and Automatic pipeline for generating nucleosome and methylation maps from high throughput sequencing data underlying ancient samples. Recent developments in ancient DNA research have shown that not only ancient genomes but ancient epigenomes can be recovered from high-throughput DNA sequence data. Although direct methods, such as bisulfite DNA treatment (Llamas et al. 2012) and target enrichment for methylated...
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open-archaeo
software

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source code for ODATE textbook draft ODATE Logo by LogoMakr.com To restore the repository download the bundle wget https://archive.org/download/github.com-o-date-draft_-_2020-07-11_17-25-37/o-date-draft_-_2020-07-11_17-25-37.bundle and run: git clone o-date-draft_-_2020-07-11_17-25-37.bundle Source: https://github.com/o-date/draft Uploader: o-date Upload date: 2020-07-11
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open-archaeo
software

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The EAGER Pipeline DEPRECATED Please instead use https://github.com/nf-core/eager as EAGERv1 won't be developed any further. EAGER-GUI This is the main project for the EAGER project, with links to some tutorials, subsequent tools and HowTos and a FAQ which will be updated once we get feedback from end users. Please use the different bug trackers for other tools than the actual pipeline, e.g. the Clip&Merge issue tracking if you encounter issues with the Clip&Merge application. There is...
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open-archaeo
software

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What’s the correlation between the exposure time of your photographs and the time of the day? expotime What's the correlation between the exposure time of your photographs and the time of the day? Good question. With clever use of GExiv2 via Python, it's easy to extract the data from EXIF tags. I used R to plot the data. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-expotime_-_2020-08-08_08-20-45/steko-expotime_-_2020-08-08_08-20-45.bundle...
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open-archaeo
software

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GeoJSON files for ceramic kilns of the ancient world, no chronological/spatial boundaries. An experiment, feel free to submit your pull requests! Ceramic kilns and workshops in the ancient world This repository contains GeoJSON map files about ceramic kilns and workshops ( ateliers ) in the ancient world: Classical antiquity, Eastern civilizations, pre-Columbian Americas, etc.. if it is an archaeological feature, it will be good for this repository. How to contribute You will need a GitHub...
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