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open-archaeo
by Landesamt-fuer-Archaeologie-Sachsen
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QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS_arch QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS arch (T2G arch) is a QGIS plugin that serves as application module for archaeological on-site documentation. It is designed to work with the forked Tachy2GIS plugin. T2g_arch aims to provide functions for an effective workflow with a focus on on-site documentation of geometries using a total station. The plugin is designed to...
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open-archaeo
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None zoolog : Zooarchaeological Analysis with Log-Ratios Jose M Pozo , Silvia Valenzuela-Lamas , Angela Trentacoste , Ariadna Nieto-Espinet and Silvia Guimarães Chiarelli The R package zoolog includes functions and reference data togenerate and manipulate log-ratios (also known as log size index (LSI)values) from measurements obtained on zooarchaeological material. Logratios are used to compare the relative (rather than the absolute)dimensions of animals from archaeological contexts (Meadow...
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open-archaeo
by msu-anthropology
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Digital Encyclopedia of Archaeologists deoa Digital Encyclopedia of Archaeologists To restore the repository download the bundle wget https://archive.org/download/github.com-msu-anthropology-deoa_-_2017-11-29_06-22-59/msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle and run: git clone msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle Source: https://github.com/msu-anthropology/deoa Uploader: msu-anthropology Upload date: 2017-11-29
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open-archaeo
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:hourglass: Analysis of Chronological Patterns from Archaeological Count Data kairos Overview A toolkit for absolute dating and analysis of chronological patterns.This package includes functions for chronological modeling and dating ofarchaeological assemblages from count data. It allows to compute timepoint estimates (e.g. Mean Ceramic Date) and density estimates of theoccupation and duration of an archaeological site. Initial development is in progress. Installation You can install the...
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open-archaeo
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Quantum GIS plugin for visibility analysis Advanced viewshed analysis for QGIS Version: 1.2 Supported QGIS version: 3.x Licence: GNU GPLv3 Documentation : zoran-cuckovic.github.io/QGIS-visibility-analysis/ Author: Zoran Čučković ( web page ) Introduction: Viewshed analysis plugin for QGIS calculates visible surface from a given observer point over a digital elevation model. The plugin is intended for more complex modelling, such as the depth below the visible horizon or generation of...
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open-archaeo
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Software to call ROHs hapROH Software to call ROH from ancient and present-day DNA using reference haplotypes.Author: Harald Ringbauer, September 2020Code released under GNU General Public License v3.0 Development Code behind python package hapROH.See https://pypi.org/project/hapROH/ for detail about the current version and installation. This is the git repository for development, as well as code used in the hapROH publication(Preprint at https://doi.org/10.1101/2020.05.31.126912) This code is...
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open-archaeo
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Datasets used in Binford's 2001 book "Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets" binford This package contains datasets used in: Binford, Lewis R. 2001. Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets University of California Press, Berkeley. This package contains three datasets: LRB : environmental and...
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open-archaeo
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A dataset of Roman amphitheaters. About 'roman-amphitheaters' is a digital resource that collects information about Roman amphitheaters with a primary goal being the easy use of its data in a wide variety of computational environments. It is designed to support open-ended inquiry into the place and role of amphitheaters in the Roman Empire. The file 'roman-amphitheaters.geojson' holds the latest information and is the source for other derived files, including 'roman-amphitheaters.csv' and the...
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open-archaeo
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Synthetic Categories for Archaeological Vessel Comparison synthkat Synthetic Categories for Archaeological Vessel Comparison Synthkat is a computational initiative to construct flexible, synthetic categories of established ceramic and glass vessel classifications and typologies of the ancient Roman world. It will take a collection of different vessel-types, expressed as a set of attributes, and recategorize them to allow for cross-project comparison of assemblages. Project files and algorithms...
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open-archaeo
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A Bayesian radiocarbon chronology model with R New: Bchron website Bchron is a Bayesian chronology model implemented in R. The package enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine...
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open-archaeo
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A web app and mapping interface for searching and displaying bibliographic information about Anatolian archaeology Anatolia Bibliography Map of Archaeology The goal of this project is to spatially locate bibliographic resources (published articles, books) regarding the archaeology of Anatolia (modern Turkey). This takes the bibliography of archaeology to the next level by showing not only the topics and authors, but where the archaeological research is being done. Note: This web app was...
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open-archaeo
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:closed_book: Datasets for Teaching Archaeology and Palaeontology folio Datasets for teaching quantitative approaches and modeling inarchaeology and paleontology. This package provides several types ofdata related to broad topics (cultural evolution, radiocarbon dating,paleoenvironments, etc.), which can be used to illustrate statisticalmethods in the classroom (multivariate data analysis, compositional dataanalysis, diversity measurement, etc.). This package is for teaching purposes only: some...
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open-archaeo
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None Iraq_mortar This application has three files: createTasks.py: for creating the application in PyBossa, and fill it with some tasks. template.html: the view for every task and deal with the data of the answers. tutorial.html: a simple tutorial for the volunteers. Funded Partners Testing the application You need to install the pybossa-client first (use a virtualenv and this needs boto): bash $ pip install -r requirements.txt $ cp s3_settings.py.tmpl s3_settings.py In the settings file, just...
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open-archaeo
by andredebuisne
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Archaeological Information System AIS - Archaeological Information System Created by Andre Debuisne - 2017 Written in C++ with Qt library A packaged .exe will be uploaded soon Current state of the AIS Current functionnalities : Create an archaeological site (.archeo) Create a layer (.arcus) Create an object Create a horizon Modify site, horizon, layer or object Delete site, horizon, layer or object I am working on : Harris Matrix Data table view Site sectors To restore the repository download...
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R package for quantitative ethnobotany ethnobotanyR The goal of ethnobotanyR is to provide an easy-to-use platform forethnobotanists to work with quantitative ethnobotany assessments. Itclosely follows Tardio and Pardo-de-Santayana(2008) and Whitney etal. (2018) . Users of ethnobotanyR may find it useful to read the background papersand books on ethnobotany theory. In particular Albuquerque etal. (2019) and Gaoue etal. (2017) offer helpfulguidance to understanding theoretical approaches in...
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open-archaeo
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None To restore the repository download the bundle wget https://archive.org/download/github.com-Chronomodel-chronomodel_-_2021-02-02_16-41-52/Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle and run: git clone Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle Source: https://github.com/Chronomodel/chronomodel Uploader: Chronomodel Upload date: 2021-02-02
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open-archaeo
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Proof of concept map for disaster response and archaeology. For Keeping History Above Water conference, 2017 disastermap Demonstration map for disaster response and archaeology. For Keeping History Above Water conference, 2017. This data should not be used for official planning or decision making. Demonstration available at https://aejolene.github.io/disastermap/ Presentation details: Archaeology Disaster Response A demonstration map for Keeping History Above Water Conference, November 1, 2017...
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open-archaeo
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None A collection of texts, 3d models, and maybe other resources useful for teaching about the Roman Empire. gh-pages versions: http://sebastianheath.com/teaching-rome/open-university-intro http://sebastianheath.com/teaching-rome/identify-imperial-portraits/ To restore the repository download the bundle wget https://archive.org/download/github.com-sfsheath-teaching-rome_-_2017-09-21_03-53-33/sfsheath-teaching-rome_-_2017-09-21_03-53-33.bundle and run: git clone...
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open-archaeo
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An open source radiocarbon (14C) calibration software. Written in Python A radiocarbon calibration software DOI: https://doi.org/10.5281/zenodo.630455 IOSACal is the open source radiocarbon calibration software of the IOSA project. IOSACal includes: a programming library a web-based application a command-line program IOSACal is written in the Python programming language and it can runnatively on any platform where the Python interpreter is available,including all Linux distributions, MacOS X...
Topics: Codeberg, code, software, git
open-archaeo
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Fluorescence fitting GUI. To restore the repository download the bundle wget https://archive.org/download/github.com-NSLS-II-PyXRF_-_2021-02-03_16-51-52/NSLS-II-PyXRF_-_2021-02-03_16-51-52.bundle and run: git clone NSLS-II-PyXRF_-_2021-02-03_16-51-52.bundle Source: https://github.com/NSLS-II/PyXRF Uploader: NSLS-II Upload date: 2021-02-03
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open-archaeo
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A toolset to work with modular genotype databases poseidon-tools A toolset to work with modular genotype databases formatted using Poseidon. The main executable within this package is called trident . Installation Quickstart Guide for the command line utility Poseidon package repositories Analysing your own dataset outside of the main repository Package creation and manipulation commands : init , forge , update Inspection commands : list , summarise , survey , validate Analysis commands :...
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open-archaeo
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None HOPS Summary ## HOPS is a java pipeline which focuses on screening MALT data (see Table of Contents) for the presence of a user-specified list of target species. The pipeline essentially exists to make it easier to use MALT and MaltExtract in unison. To use HOPS you will need a config file, which specifies some key parameters for MALT and MaltExtract. You can have multiple config files to quickly redo a previous analysis or archive them to remember parameters you used in an analysis. HOPS...
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open-archaeo
software

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R Package - Download and Prepare C14 Dates from Different Source Databases c14bazAAR is an R package to query different openly accessible radiocarbon date databases. It allows basic data cleaning, calibration and merging. If you're not familiar with R other tools (such as GoGet ) to search for radiocarbon dates might be better suited for your needs. Installation How to use ( Download , Calibration , Material classification , Country attribution , Duplicates , Conversion , Technical functions ,...
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open-archaeo
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Software deliverables for the ArchAIDE project archaide-software Software deliverables for the ArchAIDE project Installation The setup instructions were tested on Linux (Ubuntu 16.04) 64-bits. While theyshould work with minor modifications also on Windows/Mac, this was not tested. Python You will need to use Python >= 3.5.2 Required Python packages To run the code, you will need to have at least the following packages installedin your environment: numpy >= 1.15.1 tensorflow-gpu >=...
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open-archaeo
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Online archaeological data manager - [website](https://ishtar-archeo.net/) - [tracker](https://tickets.iggdrasil.net/projects/ishtar) - [documentation](http://ishtar.readthedocs.io/) - [forum](https://forum.ishtar-archeo.net/) Ishtar Description Ishtar is a database project for managing archaeological data and documentation (including archaeological finds) from archaeological operations, published as a free software under AGPL 3.0 or any later version license. The aim is to ensure maximum...
Topics: GitLab, code, software, git
open-archaeo
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A library for X-ray matter interaction cross sections for X-ray fluorescence applications xraylib: a library for interactions of X-rays with matter Welcome to the xraylib Github project page! For all information, consult the official documentation Get in touch using Gitter To restore the repository download the bundle wget https://archive.org/download/github.com-tschoonj-xraylib_-_2021-01-06_18-55-17/tschoonj-xraylib_-_2021-01-06_18-55-17.bundle and run: git clone...
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open-archaeo
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Computer Aided Archaeology - course website repository. smada Statistical methods for archaeological data analysis - course website repository. To restore the repository download the bundle wget https://archive.org/download/github.com-BernCoDALab-caa_-_2021-06-23_13-44-53/BernCoDALab-caa_-_2021-06-23_13-44-53.bundle and run: git clone BernCoDALab-caa_-_2021-06-23_13-44-53.bundle Source: https://github.com/BernCoDALab/caa Uploader: BernCoDALab Upload date: 2021-06-23
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Human stature apprixmation according to different conveniant estimation formula. statuAAR Estimation of human stature from long bone measurements according to several well established estimation formula. For a general introduction: Siegmund, F. (2019). Die Körpergröße der Menschen in der Ur- und Frühgeschichte Mitteleuropas und ein Vergleich ihrer anthropologischen Schätzmethoden. (Beiträge zur Archäologie des Lebensstandards, 1). Norderstedt: BoD. Ruff, Chr. B. (ed.) (2018). Skeletal...
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Frequency time-series tools for archaeology archSeries Tools for Chronological Uncertainty in Archaeology Overview This package is designed to tackle a common problem in archaeology: the integration of information from multiple entities with varying chronological resolution and overlapping date ranges. It includes functions for constructing overall chronological distributions from tables of start dates, end dates, and weights; and for plotting those distributions in various ways. Distributions...
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open-archaeo
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This repository contains our data and R code for our article on computational text analysis of racism in archaeology. Computational text analysis of archaeological writing about race This repository contains the data and code for our paper. Our pre-printis online here: Park, G., L-Y Wang, B. Marwick, (2020) How do archaeologists write about race? Computational text analysis of 41 years of Society of American Archaeology Annual Meeting Abstracts . , Accessed 21 Jun 2021. Online at...
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A function for retrieving metrics for resistance-resilience from rcarbon permTest objects. p2pPerm A function for retrieving metrics for resistance-resilience from rcarbon SpdPermTest objects. p2pPerm() is an adaptation of Edinborough et al.'s post-hoc statistical test for demographic events in written and oral history (https://doi.org/10.1073/pnas.1713012114). The original function - p2pTest() in rcarbon - is for use with objects of class SpdModelTest . This function extends the principle to...
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open-archaeo
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Chronological Bayesian models integrated for Optically Stimulated Luminescence (OSL) Dating BayLum An R package for chronological Bay esian models integrated forOptically Stimulated (OSL) Lum inescence Dating Installation To install the latest development builds directly from GitHub, run rif(!require("devtools")) install.packages("devtools")devtools::install_github("crp2a/BayLum@master") To install a developer build other than ‘master’, replace the...
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Platform for crowdsourcing the digital recreation of lost heritage Rekrei Platform About Rekrei Rekrei (founded as Project Mosul, we changed our name in late 2015) is a volunteer project that crowdsources the digital reconstruction of lost heritage. The project was founded by Matthew Vincent and Chance Coughenour in March 2015. You can read more about the project on our about page Core Team Rekrei is a community of people who actively contribute towards the preservation of cultural heritage...
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open-archaeo
by dirkseidensticker
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Archives des datations radiocarbone d'Afrique centrale aDRAC ( Archive des datations radiocarbones d’Afrique centrale ) Dirk Seidensticker & Wannes Hubau The archive for radiocarbon datings from Central Africa (aDRAC)provides a catalogue of available radiocarbon dates from Central Africa.The data cover published radiocarbon dates and essential metadata foreach date as well as available references. The data cover 1840 radiocarbon dates from 588 sites: Dates are available for the past up to...
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None SequenceTools This repository contains some programs that I use for processing sequencing data. Installation Simple Installation via stack and hackage This installation installs the latest version that is up on hackage : Download stack (https://docs.haskellstack.org/en/stable/README/#how-to-install). Run stack install sequenceTools --resolver nightly . You should now have the executables from this package under ~/.local/bin . Add ~/.local/bin to your PATH, for example by adding to your...
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R package for community ecologists: popular ordination methods, ecological null models & diversity analysis vegan: an R package for community ecologists Released version Build status To restore the repository download the bundle wget https://archive.org/download/github.com-vegandevs-vegan_-_2021-02-02_10-51-39/vegandevs-vegan_-_2021-02-02_10-51-39.bundle and run: git clone vegandevs-vegan_-_2021-02-02_10-51-39.bundle Source: https://github.com/vegandevs/vegan Uploader: vegandevs Upload...
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Solving Ordinary Differential Equations to Understand Luminescence RLumModel The R package ‘RLumModel’ by Johannes Friedrich (University ofBayreuth, Germany), Sebastian Kreutzer (IRAMAT-CRP2A, UniversitéBordeaux Montaigne, France) and Christoph Schmidt (University ofBayreuth, Germany) provides a collection of various R functionsmodelling luminescence signals in quartz andAl 2 O 3 , based on energy-band models. For an introduction and further details, visit the RLumModelhomepage ....
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ArcGIS toolbox for fuzzy viewshed calculation FuzzyViewshed Short Description The toolbox (built under ArcGIS 10.1 ) provides the facility to calculate the Fuzzy Viewshed as proposed by Ogburn 2006 , which modify the original proposal by Fisher. It produces a Fuzzy Vieshed raster in which, as customary in 'regular' (i.e., binary) viewshed rasters, 0 indicates cells that are not visible, 1 indicates cells that are visible. However, unlike binary viewshed, values between 0 and 1 correspond to a...
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open-archaeo
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Core development repository. gitHub: Vsn 6 (2020 - ), Vsn 5 (2018 - 2020), Vsn 4 (2014-2017). Sourceforge: Vsn 3 (2009-2013), Vsn 1 & 2 (2005-2009) HEURIST Core development repository, Vsn 6 (2021 - ), Vsn 5 (2018 - 2020), Vsn 4 (2014-2017). Vsn 1 - 3 on Sourceforge (2005 - 2013) See below the intro for information on code, licensing, installating, contributing and issue tracking Heurist is a mature web-based data management infrastructure that is specifically tailored to the needs of...
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Repository containing lists of all published ancient metagenome samples (and related) ----[![License: CC BY 4.0](https://img.shields.io/badge/License-CC%20BY%204.0-orange.svg)](https://creativecommons.org/licenses/by/4.0/)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3980833.svg)](https://doi.org/10.5281/zenodo.3980833)![check_dataset](https://github.com/spaam-community/AncientMetagenomeDir/workflows/check_dataset/badge.svg)[![Joins us on...
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Package for modelling artefact-scale data rtfact Package for modelling archaeological artefact data To restore the repository download the bundle wget https://archive.org/download/github.com-ahb108-rtfact_-_2021-01-25_09-24-54/ahb108-rtfact_-_2021-01-25_09-24-54.bundle and run: git clone ahb108-rtfact_-_2021-01-25_09-24-54.bundle Source: https://github.com/ahb108/rtfact Uploader: ahb108 Upload date: 2021-01-25
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Arches is a web platform for creating, managing, & visualizing geospatial data. Arches was inspired by the needs of the Cultural Heritage community, particularly the widespread need of organizations to build & manage cultural heritage inventories Arches Arches is a web-based, geospatial information system for cultural heritage inventory and management. Arches is purpose-built for the international cultural heritage field, and designed to record all types of immovable heritage, including...
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Bayesian tools for reconstructing past demography baydem The R package baydem (for bayESIAN demOGRAPHY) provides tools for reconstructing past and present demography. Installation There are three options for installing and using the package: (1) Install on an existing computer with necessary dependencies(2) Build a Docker image using the Dockerfile(3) Use a Docker image from Docker Hub Option 1: Install on an existing computer with necessary dependencies Details will vary based on the machine...
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R script for analyzing presence/absence data in irregularly distributed archaeological survey units Near-Presence-Analysis R script for analyzing presence/absence data in irregularly distributed archaeological survey units To restore the repository download the bundle wget https://archive.org/download/github.com-eweaverdyck-Near-Presence-Analysis_-_2021-06-11_19-30-34/eweaverdyck-Near-Presence-Analysis_-_2021-06-11_19-30-34.bundle and run: git clone...
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Radiocarbon dating laboratory code Radiocarbon dating laboratory code List of all past and present radiocarbon laboratory codes known to have been used in published references.\* = laboratories that are no longer operating or have changed their code designations. link c14-lab-code.csv c14-lab-code.txt Model |Code|Lab name|Country||---|---|---||A|Arizona|USA||AA|NSF|USA||AAR|University of Aarhus|Denmark||AC|Ingeis|Argentina||AECV |Alberta Environmental Center of Vegreville|Canada||AERIK |Atomic...
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Ancient DNA Read Simulator for Metagenomic Introduction ADRSM (Ancient DNA Read Simulator for Metagenomics) is a tool designed to simulate the paired-end sequencing of a metagenomic community. ADRSM allows you to control precisely the amount of DNA from each organism in the community, which can be used, for example, to benchmark different metagenomics methods. Requirements Conda Installation conda install -c maxibor adrsm Usage adrsm ./data/short_genome_list.csv Output metagenome.{1,2}.fastq :...
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Survey made easy (Android/iOS/Windows app) Input Platform builds: Other Checks: Input makes surveying of geospatial data easy. You can design your survey project in QGIS with custom forms. Download Click below to download the app on your mobile device: Current Release Beta Release For more information on how to use the app, see Documentation . How to help/contribute? Help with translations, join Input App Transifex Team Write a review of the application on App Store or Android Google Play Test...
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Total Station Online-Surveying with QGIS Dependencies: Tachy2GIS 3D-Viewer requires vtk to run. If you don't have it already (test this by typing import vtk in a python console), see Installation . Alternatively you can use pipenv to handle the dependencies for you, see the section Developer Notes further down for more info on this. You need at least QGIS version 3.10.7. This is because there are issues in previous versions when creating geometry from Well-known text. Your Total Stations Data...
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R package for clean radiocarbon data cleanc14 cleanc14 provides some utility functions for cleaning radiocarbon data in R. Installation You can install the development version of cleanc14 using the remotes package: rremotes::install_github("joeroe/cleanc14") To restore the repository download the bundle wget https://archive.org/download/github.com-joeroe-cleanc14_-_2021-05-04_08-45-08/joeroe-cleanc14_-_2021-05-04_08-45-08.bundle and run: git clone...
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Development repository for GeoChronR geoChronR geoChronR What is it? Quantifying age uncertainties is a critical component of paleoscience (paleoclimatology, paleoecology, paleontology). geoChronR is an integrated framework that allows scientists to generate state-of-the-art age models for their records, create time-uncertain ensembles of their data, analyze those ensembles with a number of commonly-used techniques, and visualize their results in an intuitive way. The code is being developed in...
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A simplified touch optimized interface for QGIS QField for QGIS A simplified touch optimized interface for QGIS. Perfect for field work on portable touch devices. Get it Check the documentation Contribute QField is an open source project, licensed under the terms of the GPLv2 or later. This means that it is free to use and modify and will stay like that. We are very happy if this app helps you to get your job done or in whatever creative way you may use it. If you found it useful, we will be...
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:round_pushpin: Multivariate Data Analysis dimensio Simple Principal Components Analysis (PCA) and Correspondence Analysis(CA) based on the Singular Value Decomposition (SVD). This packageprovides S4 classes and methods to compute, extract, summarize andvisualize results of multivariate data analysis. It also includesmethods for partial bootstrap validation. There are many very good packages for multivariate data analysis (suchas FactoMineR , ade4 or ca , all extended by FactoExtra ). dimensio...
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None outliner A simple app for tracing outlines of an irregular shape and exporting the coordinates of the outline. Please install ImageMagick before attempting to use. Run the app from GitHub with shiny::runGitHub("benmarwick/outliner") To restore the repository download the bundle wget https://archive.org/download/github.com-benmarwick-outliner_-_2021-01-31_08-26-33/benmarwick-outliner_-_2021-01-31_08-26-33.bundle and run: git clone benmarwick-outliner_-_2021-01-31_08-26-33.bundle...
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Paleoclimate Reconstruction from Tree Rings using Correlation Adjusted corRelation paleocar paleocar is an R package implementing functions to performspatio-temporal paleoclimate reconstruction from tree-rings using theCAR (Correlation Adjusted corRelation) approach of Zuber and Strimmer asimplemented in the care package for R . It isoptimized for speed and memory use. This is based on the approach used in Bocinsky and Kohler (2014): Bocinsky, R. K. and Kohler, T. A. (2014). A 2,000-year...
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Visual shape-matching of ceramics profiles CeraMatch Shape matching and clustering of ceramic shapes To restore the repository download the bundle wget https://archive.org/download/github.com-demjanp-CeraMatch_-_2021-01-26_21-06-30/demjanp-CeraMatch_-_2021-01-26_21-06-30.bundle and run: git clone demjanp-CeraMatch_-_2021-01-26_21-06-30.bundle Source: https://github.com/demjanp/CeraMatch Uploader: demjanp Upload date: 2021-01-26
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:amphora: A Collection of R S4 Classes that Represent Archaeological Data arkhe Overview A collection of classes that represent archaeological data. This packageprovides a set of S4 classes that represent different special types ofmatrix (absolute/relative frequency, presence/absence data,co-occurrence matrix, etc.) upon which package developers can buildsubclasses. It also provides a set of generic methods (mutators andcoercion mechanisms) and functions (e.g. predicates). In addition, a...
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Formal methods to study Prehistory iconography iconr package modeling Prehistoric iconography Created by Thomas Huet , Jose M Pozo , Craig Alexander The R package iconr is grounded in graph theory and spatial analysis to offer concepts and functions for modeling Prehistoric iconographic compositions and preparing for further analysis (clustering, typology tree, Harris diagram, etc.). The package purpose is to contribute to cross-cultural comparison through a greater normalization of...
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R Package - Analyse geomagnetic data from archaeological context magAAR To restore the repository download the bundle wget https://archive.org/download/github.com-ISAAKiel-magAAR_-_2017-06-10_14-34-21/ISAAKiel-magAAR_-_2017-06-10_14-34-21.bundle and run: git clone ISAAKiel-magAAR_-_2017-06-10_14-34-21.bundle Source: https://github.com/ISAAKiel/magAAR Uploader: ISAAKiel Upload date: 2017-06-10
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An open access digital archive of antique Christian texts Patristic Text Archive: An open access digital archive of antique Christian texts This is the data repository for all texts in the Patristic Text Archive . All texts and metadata are distributed according to Capitains guidelines and encoded according to the Patristic Text Archive Schema . LICENSE: The individual files are licensed by different Creative Commons Licenses. The respective license is mentioned in the header of each file. This...
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GIS toolbox for estimating the duration of ancient sail-powered navigation TRANSIT: Toolbox foR ANcient Sailing tIme esTimation Short Description Cost-surface analysis in Geographic Information System environment has been less frequently used in the study of ancient sail navigation than in other studies of the human past. Navigation cost-surface analysis entails the use of GIS tools that are versatile but not very easy to grasp and to put to work. TRANSIT is an ArcGIS toolbox built to...
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The Classical Language Toolkit To restore the repository download the bundle wget https://archive.org/download/github.com-cltk-cltk_-_2021-07-03_17-12-10/cltk-cltk_-_2021-07-03_17-12-10.bundle and run: git clone cltk-cltk_-_2021-07-03_17-12-10.bundle Source: https://github.com/cltk/cltk Uploader: cltk Upload date: 2021-07-03
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OpenAtlas is an open source, web based database system for complex archaeological, historical and prosopographical data. About OpenAtlas is an open source, web based database system forcomplex archaeological, historical and prosopographical data. The information is mapped as a network using classes and properties of the CIDOC CRM . Documentation: Manual , Wiki , Issues Demo versions Demo with data kindly provided by the MEDCON project. Development demo with data kindly provided by the DPP...
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Open Context Python Code Repository open-context-py Open Context Python Code Repository This project represents the current evolution of Open Context. It's intended to be an easier to maintain code-base,and to make the data published by Open Context easier to maintain. Installation and Deployment See the docs . Licensing: All the source code specific to this project is licensed under a GNU-GPL license (v. 3) All the usual liability waivers and disclaimers about using this code at your own...
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open-archaeo
by emanuelhuber
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Ground-penetrating radar (GPR) data processing and visualisation: a free and open-source software package (R language) RGPR : a free and open-source software package for ground-penetrating radar (GPR) data processing If you have any questions, comments or suggestions, feel free to contact me (in english, french or german): emanuel.huber@pm.me I am developing this package on my free time as a gift to the GPR community. Any support will be appreciated! RGPR is a free and open-source software...
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Forms for the Open Data Kit mobile data collection app ODK-forms-archaeology Forms for the Open Data Kit mobile data collection app These are a series of ODK forms I've created for my own archaeological field work. I provide them here, with no guarantees, warranties, support, or instructions, in case they may be useful for you. Most are provided in both the editable Excel spreadsheet form for use with xlsform , as well as the final XML for import into ODK or GeoODX. One or two may only have the...
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This is an R implementation of the procedure outlined by John M. Roberts, Jr. et al. (2012) "A method for chronologically apportioning of ceramic assemblages" published in the Journal of Archaeological Science CeramicApportioning This is an R implementation of the procedure outlined by John M. Roberts, Jr. et al. (2012) "A method for chronologically apportioning of ceramic assemblages" published in the Journal of Archaeological Science Roberts, John M., Jr., Barbara J....
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None ContamLD ContamLD is a software designed to estimate autosomal contamination in ancient DNA samples. The software requires Python 3 and R (any version should suffice). Citation: Nakatsuka, N.*; Harney, E.*; Mallick, S..; Mah, M.; Patterson, N.; Reich, D. "Estimation of Ancient Nuclear DNA Contamination Using Breakdown of Linkage Disequilibrium." BioRxiv. Contact: Nathan Nakatsuka: nathan_nakatsuka@hms.harvard.edu Steps for use: Section 1) Pre-processing steps Part 1) Download...
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A compilation of anthropogenic radiocarbon dates for the Caribbean region caribbean-14C A compilation of 2147 anthropogenic radiocarbon ( 14 C) dates for the Caribbean region from 504 sites across 57 islands. The information in this repository is largely adapted from the paper "Reevaluating human colonization of the Caribbean using chronometric hygiene and Bayesian modeling" by Napolitano et al. in Science Advances (https://doi.org/10.1126/sciadv.aar7806). It also includes a number of...
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A list of open source archaeological software and resources Open Archaeology Software & Resources A list of open source archaeological software and resources See ToDo.md for a list of tools or resources that are in demand, but which currently do not exist or need to be significantly improved. 3d-ceramics : 3d models of archaeological ceramics. by: sfsheath links: [ GitHub ] * tags: [3D modelling] A Mobile Data-Collection Workflow for Archaeologists : A list of tools and resource for data...
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The Database of Obsidian Sourcing Studies DObsiSS The Database of Obsidian Sourcing Studies is a listing of chemically characterized archaeological obsidian, compiled from published journal articles, excavation reports, conference papers and other scholarly records. The database lists the amount of obsidian artefacts uncovered at sites in southwest Asia and Anatolia made from material derived from various volcanic sources based on geochemical analysis and comparison with geological samples....
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R package: wrapper for the C++ library `xylib` rxylib The R package rxylib provides and access to the C++ library xylib by wrapping the library usingRcpp. For supported data formats see https://github.com/wojdyr/xylib . Installation i. Requirements Windows (32/64bit) : Rtools (providedby CRAN) macOS : Xcode (provided by Apple) Linux : gcc often comes pre-installed inmost distributions. ii. Install the package (development version) To install the stable version from CRAN, simply run the...
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None ADMUR Ancient Demographic Modelling Using Radiocarbon Tools to directly model underlying population dynamics using chronological datasets (radiocarbon and other) with a variety of models, including Continuous Piecewise Linear (CPL) model framework. Optional taphonomy. Model comparison framework using BIC. Package also calibrates 14C samples, and generates Summed Probability Distributions (SPD). CPL modelling directly estimates the most likely population trajectory given a dataset, using...
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Maya Calendar Tools Tools for converting between Maya and Western calendars. The Classic Maya developed the most sophisticated system for keeping track of time in the New World. In this app, you can convert dates from the Maya Calendar (Long Count and Calendar Round) to the Gregorian or Julian Calendars and vice-versa. You can also check the Maya glyphs for the current date. More features will be added in future versions. Go to Web App To restore the repository download the bundle wget...
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Analysis of spatial gradients in radiocarbon dates spDates Analysis of Spatial Gradients in Radiocarbon Dates Jonas Gregorio de Souza jonas.gregorio@gmail.com Tools to perform time-space regressions, an approach often used by archaeologists examining the expansion of cultural phenomena. In essence, one plots the radiocarbon ages of archaeological sites against their distances from a hypothetical origin. If a cultural advance has indeed taken place, the expectation is that radiocarbon dates will...
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R package for years with an era era era is an R package that provides a consistent vector representationof years with an associated calendar era or time scale. It includesbuilt-in definitions of many contemporary and historic calendars; timescales commonly used in archaeology, astronomy, geology, and otherpalaeosciences (e.g. Before Present, SI-prefixed annus ); and supportfor arbitrary user-defined eras. Functions for converting between erasand for type-stable arithmetic with years are also...
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R package for archaeological stratigraphy and chronological sequences stratigraphr stratigraphr is a tidy framework for working with archaeological stratigraphy and chronology in R.It includes tools for reading, analysing, and visualising stratigraphies (Harris matrices) and sequences as directed graphs;helper functions for using radiocarbon dates in a tidy data analysis; and an R interface to OxCal's Chronological Query Language (CQL). Installation You can install the development version of...
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R package for extracting and analyzing grain sizes within R framework grainsizeR David Tavernini2017-02-12 Introduction This is a package developed by David Tavernini for a term project in GEOB 503. This package contains all the tools necessary to extract grain sizes from images, digitally sieve grain size measurements, and gather descriptive statistics on sieved data. For questions, comments, or issues please refer to the discussion tab or email me at taverninid@gmail.com . Requirements This...
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:bar_chart: Analysis, Seriation and Visualization of Archaeological Count Data tabula Overview An easy way to examine archaeological count data. This package providesa convenient and reproducible toolkit for relative and absolute datingand analysis of (chronological) patterns. It includes functions formatrix seriation (reciprocal ranking, CA-based seriation), chronologicalmodeling and dating of archaeological assemblages and/or objects. Beyondthese, the package provides several tests and...
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Pipelines and tools for the processing of ancient and modern HTS data. To restore the repository download the bundle wget https://archive.org/download/github.com-MikkelSchubert-paleomix_-_2021-06-18_21-33-17/MikkelSchubert-paleomix_-_2021-06-18_21-33-17.bundle and run: git clone MikkelSchubert-paleomix_-_2021-06-18_21-33-17.bundle Source: https://github.com/MikkelSchubert/paleomix Uploader: MikkelSchubert Upload date: 2021-06-18
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Extract text from sign board and tag as metadata signboardr Utilize Google Vision API to extract text from archaeological photos containing a sign board. Further, the extracted text can be added as searchable XMP metadata tags to photos. Installation You can install signboardr from github with: ``` r install.packages("devtools") devtools::install_github("mrecos/signboardr")``` Description This package is a thin wrapper around the RoogleVision package getGoogleVisionResponse...
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Methods for calibrating and analysing radiocarbon dates rcarbon This package enables the calibration and analysis of radiocarbon dates, often but not exclusively for the purposes of archaeological research. It includes functions not only for basic calibration, uncalibration, and plotting of one or more dates, but also a statistical framework for building demographic and related longitudinal inferences from aggregate radiocarbon date lists, including: Monte-Carlo simulation test (Timpson et al...
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R scripts for digitizing, processing, analyzing, and comparing archaeological ceramic Ceramic Computation R scripts for digitizing, processing, analyzing, and comparing archaeological ceramic 2d profile drawings, photographs, and other data Overview This code was written with the goal of being able to automate 2d shape analysis of archaeological ceramics, particularly profile drawings of rim sherds. Much of the work and code was designed to help extract shape data from paper publications about...
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Detect and Parse Historic Dates in R unstruwwel Overview This R package provides means to detect and parse historic dates, e.g.,to ISO 8601:2-2019. It automatically converts language-specific verbalinformation, e.g., “circa 1st half of the 19th century,” into itsstandardized numerical counterparts, e.g., “1801-01-01\~/1850-12-31\~.”The package follows the recommendations of the MIDAS (MarburgerInformations-, Dokumentations- und Administrations-System), see, e.g.,...
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software

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library for reading files with x-y data from powder diffraction, spectroscopy, or other experimental methods To restore the repository download the bundle wget https://archive.org/download/github.com-wojdyr-xylib_-_2021-01-19_22-48-51/wojdyr-xylib_-_2021-01-19_22-48-51.bundle and run: git clone wojdyr-xylib_-_2021-01-19_22-48-51.bundle Source: https://github.com/wojdyr/xylib Uploader: wojdyr Upload date: 2021-01-19
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The ARK v1.1.2 Stable Release ARK 1.1.2 Stable Release This repository is a copy of the ARK v1.1.2 tarball that can be downloaded from the ARK website at http://ark.lparchaeology.com/. Please visit this site for more information and installation instructions. About ARK ARK (The Archaeological Recording Kit) is a web-based ‘toolkit’ for the collection, storage and dissemination of archaeological data. It includes data-editing, data-creation, data-viewing and data-sharing tools, all of which...
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Preparation of Object Dating Ranges for Density Plots datplot Converting date ranges into dating 'steps' eases the visualization of changes in e.g. pottery consumption, style and other variables over time. This package provides tools to process and prepare data for visualization. A rather common problem in archaeology is the fuzzyness of dates assigned to objects. If one wants to visualize overall changes in - let's say - pottery consumption, bar charts often fall short in that regard. If,...
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software

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Compute postmortem damage patterns and decontaminate ancient genomes PMDtools Compute postmortem damage patterns and decontaminate ancient genomes. Description PMDtools computes ancient DNA damage patterns, and implements a likelihood framework incorporating postmortem damage (PMD), base quality scores and biological polymorphism to identify degraded DNA sequences that are unlikely to originate from modern contamination. Using the model, each sequence is assigned a PMD score, for which positive...
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A GNU Octave toolkit for analyzing diaphyseal long bone cross sectional geometry long-bone-diaphyseal-CSG-Toolkit A GNU Octave toolkit for analyzing diaphyseal long bone cross sectional geometry The present set of GNU Octave functions provides a novel and robust algorithm foranalyzing the diaphyseal cross-sectional geometric properties of long bones, whichcan be applied to any 3D digital model of a humerus, femur or tibia bone representedas a triangular mesh in a Wavefront OBJ file format. The...
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The GigaMesh Software Framework is a modular software for display, editing and visualization of 3D-data typically acquired with structured light scanning (SLS) or structure from motion (SfM). NAME GigaMesh - GigaMesh Software Framework for processing large meshes. DESCRIPTION The GigaMesh Software Framework is a modular software for display, editing and visualization of 3D-data typically acquired with structured light scanning (SLS) or structure from motion (SfM). It provides numerous functions...
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open-archaeo
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An online space for sharing data, 3d models, etc about archaeological objects to enable the comparison of these objects. Archaoeological Object Sharing The goal of this project is to create a web space for the collaborative sharing of archaeological objects. The users would be able to upload data, photographs, and 3d models of objects from archaeological excavations and surveys. Material could include pottery sherds, stone tools, bones, etc. The ultimate aim is that this forms a place where...
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A repository of radiocarbon data for Rapa Nui rapanui-radiocarbon A repository of radiocarbon data for Rapa Nui This repository is intended to provide access to various tables of radiocarbon dates that exist for Rapa Nui. One challenge we have found in doing analyses of radiocarbon samples is that the data are often in tables as appendices but not included in an easy-to-share format (such as CSV). Thus when working on projects involving analyses of dates, one must painfully reenter the data. At...
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open-archaeo
software

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Maya Calendar Tools Tools for converting between Maya and Western calendars. The Classic Maya developed the most sophisticated system for keeping track of time in the New World. In this app, you can convert dates from the Maya Calendar (Long Count and Calendar Round) to the Gregorian or Julian Calendars and vice-versa. You can also check the Maya glyphs for the current date. This is a React-Redux version of the Long Count tool in an older Vanilla app . Go to Web App To restore the repository...
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open-archaeo
software

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R library to generate 'Cumulative Percent Decay' curves for microbial taxonomic profiles cuperdec R package to generate 'Cumulative Percent Decay' curves, with optional filtering functions, for microbial taxonomic profiles. These curves aim to represent the level of 'endogenous' content of microbiome samples, such as ancient dental calculus, to help to identify samples with lowlevels of preservation that should be discarded for downstream analysis. Installation cuperdec is on CRAN. You can...
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R Interface to IntChron rintchron: R interface to IntChron rintchron provides an R interface to IntChron , an indexing service and exchangeformat for radiocarbon dates and other chronological data ( Bronk Ramseyet al. 2019 ). It includes a userfriendly interface for querying databases indexed by IntChron, as wellas lower level functions for interacting directly with the IntChronAPI . For an introduction to querying IntChron’s databases see the basicusage vignette . Foradvanced users, low...
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leastcostpath: Modelling Pathways and Movement Potential Within a Landscape leastcostpath - version 1.7.9 The R library leastcostpath provides the functionality to calculate Cost Surfaces based on multiple cost functions that approximate the difficulty of moving across a landscape. Furthermore, the attraction/repulsion of landscape features can be incorporated into the Cost Surfaces, as well as barriers that inhibit movement. NOTE: The R library leastcostpath requires the use of projected...
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Infrastructure for Ordering using Seriation - R Package seriation - Infrastructure for Ordering Objects Using Seriation - R package This package provides the infrastructure for ordering objects with an implementation of several seriation /sequencing/ ordination techniques to reorder matrices, dissimilaritymatrices, and dendrograms (see below for a full list). Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, andvisual assessment...
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None Senscape Senscape is a toolbox for modelling human perception of topography for QGIS, based on QGIS viewshed module . It is a subclass of QGIS processing framework and can be readily used in custom models or scripts. The plugin is in experimental phase. To install: 1. Search for “Senscape” in QGIS plugin manager (make sure experimental plugins are allowed)2. In Processing menu, under Options, allow Senscape provider For manual instalation see QGIS viewshed module . Files should be...
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R package to simulate a Luminescence Reader To restore the repository download the bundle wget https://archive.org/download/github.com-dstreble-LumReader_-_2017-01-26_13-55-17/dstreble-LumReader_-_2017-01-26_13-55-17.bundle and run: git clone dstreble-LumReader_-_2017-01-26_13-55-17.bundle Source: https://github.com/dstreble/LumReader Uploader: dstreble Upload date: 2017-01-26
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R package for tidy radiocarbon data c14 c14 provides basic classes and functions for radiocarbon data in R.It makes it easier to combine methods from several existing packages(e.g. rcarbon, Bchron, oxcAAR, c14bazAAR, ArchaeoPhases, stratigraphr)together and work with them in a tidy data workflow. It was forked from stratigraphr v0.3.0. Installation You can install the development version of c14 from GitHub: ``` r install.packages("devtools")...
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A comprehensive list of literature on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. The-ABM-in-Archaeology-Bibliography A selected yet comprehensive list of literature and resources on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. Know a missing resource or found a broken link? Put up a pull request ! Our very subjective list of must-reads Axtell, R. L., Epstein, J. M., Dean, J. S. Et...
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