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open-archaeo
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Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric CIRV Ceramic_Dashboard Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric Central Illinois River Valley (CIRV). To learn more about the Late Prehistoric CIRV, take a look at The Mississippian Period and The Late Mississippian Period in this pdf document. This flexdashboard is a companion to Chapter 6 of the recently completed dissertation by Andrew Upton at Michigan...
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open-archaeo
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Datasets used in Binford's 2001 book "Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets" binford This package contains datasets used in: Binford, Lewis R. 2001. Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets University of California Press, Berkeley. This package contains three datasets: LRB : environmental and...
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open-archaeo
software

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R Package - Quantitative Analysis in Archaeology quantAAR quantAAR contains tidy wrappers and useful utility function for common applications of exploratory statistics in archaeology: Wrapper functions: Correspondence Analysis : ca.ca_ca ( ca::ca ), ca.vegan_cca ( vegan::cca ) Principal Components Analysis : pca.stats_prcomp ( stats::prcomp ), pca.vegan_rda ( vegan::rda ) Seriation : seriation.seriation_seriate ( seriation::seriate ), seriation.tabula_seriate ( tabula::seriate ) Principal...
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open-archaeo
software

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A digital Babylonian clock babylonian-hours This is a javascript based digital clock which computes your local time in 'seasonal-hours'. It's currently hosted at www.babylonianhours.com . To restore the repository download the bundle wget https://archive.org/download/github.com-willismonroe-babylonian-hours_-_2019-01-05_20-36-50/willismonroe-babylonian-hours_-_2019-01-05_20-36-50.bundle and run: git clone willismonroe-babylonian-hours_-_2019-01-05_20-36-50.bundle Source:...
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open-archaeo
software

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Iterative Deterministic Seriation Solution Seriation Algorithms, implementations, manuscripts, and test cases for iterative deterministic frequency seriation done by agglomeration. These algorithms are intended to automate and extend the initial, mainly manual implementation of IDSS in Lipo (2001). commandline: python ./IDSS.py --inputfile=../testdata/pfg.txt --xyfile=../testdata/pfgXY.txt --largestonly=1 --mst=1 --screen=1 as a module: import IDSSseriation= IDSS() args={}args['inputfile']...
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open-archaeo
software

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Map of the Roman Empire made with vector tiles Roman Empire Roman Empire Map made with vector tiles :globe with meridians: Browse the map Edit online Blog posts: http://commons.pelagios.org/2017/11/building-the-roman-empire-vector-tile-map/ http://commons.pelagios.org/2017/09/rdg-update-the-roman-empire-vector-map-project/ More information at: Source: Digital Atlas of the Roman Empire Further information at OpenMapTiles.org To restore the repository download the bundle wget...
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open-archaeo
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Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility LA ICP MS-Routines_FMNH Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility Significant contributions include:- Reading in large amounts of cleaned LA-ICP-MS data from xlsx files with each day as a separate sheet- Tidying the LA-ICP-MS data into a tidy data frame- Functions for converting elements calculated as % oxide to ppm- Writing the file to a csv in...
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open-archaeo
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Data from Uerpmann 1987, The Ancient Distribution of Ungulate Mammals in the Middle East, TAVO A27 Uerpmann 1987, The Ancient Distribution of Ungulate Mammals in the Middle East , TAVO A27 This repository contains data from Uerpmann’s (1987), The AncientDistribution of Ungulate Mammals in the MiddleEast ,volume 27 of the Tübinger Atlas des Vorderen Orients (TAVO), Series A. Uerpmann catalogued the occurrence of ungulate taxa in animal boneassemblages from 196 sites across the Middle East,...
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open-archaeo
by Landesamt-fuer-Archaeologie-Sachsen
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QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS_arch QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS arch (T2G arch) is a QGIS plugin that serves as application module for archaeological on-site documentation. It is designed to work with the forked Tachy2GIS plugin. T2g_arch aims to provide functions for an effective workflow with a focus on on-site documentation of geometries using a total station. The plugin is designed to...
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open-archaeo
software

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A page for video tutorials on R, specifically for archaeology To restore the repository download the bundle wget https://archive.org/download/github.com-MartinHinz-vitutr_-_2019-07-10_07-18-25/MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle and run: git clone MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle Source: https://github.com/MartinHinz/vitutr Uploader: MartinHinz Upload date: 2019-07-10
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open-archaeo
software

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A Bayesian radiocarbon chronology model with R New: Bchron website Bchron is a Bayesian chronology model implemented in R. The package enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine...
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open-archaeo
software

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Plugin for drawing trenches To restore the repository download the bundle wget https://archive.org/download/github.com-MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06/MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle and run: git clone MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle Source: https://github.com/MikeJJohnson/trenchdrawer Uploader: MikeJJohnson Upload date: 2016-05-10
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open-archaeo
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Bindings to the tDAR API tdar This package allows programmatic access to the Digital ArchaeologicalRecord (tDAR) , a service of DigitalAntiquity . Installation You can install tdar from github with: # install.packages("devtools")devtools::install_github("bocinsky/tdar") Please note that this project is released with a Contributor Code ofConduct . By participating in this project you agree toabide by its terms. Basic usage Authentication tDAR authentication is handled through...
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open-archaeo
software

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None zoolog : Zooarchaeological Analysis with Log-Ratios Jose M Pozo , Silvia Valenzuela-Lamas , Angela Trentacoste , Ariadna Nieto-Espinet and Silvia Guimarães Chiarelli The R package zoolog includes functions and reference data togenerate and manipulate log-ratios (also known as log size index (LSI)values) from measurements obtained on zooarchaeological material. Logratios are used to compare the relative (rather than the absolute)dimensions of animals from archaeological contexts (Meadow...
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open-archaeo
by msu-anthropology
software

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Digital Encyclopedia of Archaeologists deoa Digital Encyclopedia of Archaeologists To restore the repository download the bundle wget https://archive.org/download/github.com-msu-anthropology-deoa_-_2017-11-29_06-22-59/msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle and run: git clone msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle Source: https://github.com/msu-anthropology/deoa Uploader: msu-anthropology Upload date: 2017-11-29
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open-archaeo
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An R package to simulate species occurences and abundances (counts) along gradients coenocliner Released version Build status What is coenocliner? An R package to simulate species abundances (counts) along gradients One of the key ways quantitative ecologists attempt to understand the properties and behaviour of the methods they use or dream up is through the use of simulated data. There are a number of computer programmes for simulating ecological data along gradients, such as Peter Minchin's...
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open-archaeo
software

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R package for spatial sampling and survey simulation fieldwalkr fieldwalkr is a tool for designing and evaluating sampling strategies in spatial survey ( fieldwalking in archaeological jargon).It contains functions for simulating the effect of different survey units, sampling methods and detection functions on the estimation of randomly generated or observed point processes. Installation {r}devtools::install_github("joeroe/fieldwalkr") Demo An introduction to and short demonstration...
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open-archaeo
software

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Quantum GIS plugin for visibility analysis Advanced viewshed analysis for QGIS Version: 1.2 Supported QGIS version: 3.x Licence: GNU GPLv3 Documentation : zoran-cuckovic.github.io/QGIS-visibility-analysis/ Author: Zoran Čučković ( web page ) Introduction: Viewshed analysis plugin for QGIS calculates visible surface from a given observer point over a digital elevation model. The plugin is intended for more complex modelling, such as the depth below the visible horizon or generation of...
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open-archaeo
software

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Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data cranial-sex-estimation-code Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data To reimplement the analysis grab the morphometric feature dataset from https://zenodo.org/record/3632180 and save the relevant files into the corresponding folders. Keep the current directory structure and from within GNU Octave command window enter the ./analysis...
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open-archaeo
software

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A dataset of Roman amphitheaters. About 'roman-amphitheaters' is a digital resource that collects information about Roman amphitheaters with a primary goal being the easy use of its data in a wide variety of computational environments. It is designed to support open-ended inquiry into the place and role of amphitheaters in the Roman Empire. The file 'roman-amphitheaters.geojson' holds the latest information and is the source for other derived files, including 'roman-amphitheaters.csv' and the...
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open-archaeo
software

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Synthetic Categories for Archaeological Vessel Comparison synthkat Synthetic Categories for Archaeological Vessel Comparison Synthkat is a computational initiative to construct flexible, synthetic categories of established ceramic and glass vessel classifications and typologies of the ancient Roman world. It will take a collection of different vessel-types, expressed as a set of attributes, and recategorize them to allow for cross-project comparison of assemblages. Project files and algorithms...
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open-archaeo
software

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R-script for conducting and evaluating bootstrapped correspondence analyses following methods published by Peeples and Schachner (2012) in the Journal of Archaeological Science Bootstrap-Correspondence-Analysis R-script for conducting and evaluating bootstrapped correspondence analyses following methods published by Peeples and Schachner (2012) in the Journal of Archaeological Science This code relates to the following article: Peeples, Matthew A. and Gregson Schachner2012 Refining...
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open-archaeo
software

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Script for conducting K-means cluster analysis using R. This script provides output designed to help the user select an appropriate cluster solution. Kmeans Script for conducting K-means cluster analysis using R. This script provides output designed to help the user select an appropriate cluster solution. K-means Cluster Analysis:K-means analysis is a divisive, non-hierarchical method of defining clusters. This is an iterative process, which means that at each step the membership of each...
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open-archaeo
software

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Collection of 250+ datasets for photogrammetry Photogrammetry Datasets This is a collection of datasets for photogrammetry. A csv-table with 350+ datasets can be downloaded from this repository: datasets.csv . Contents Dataset,Camera,Category,Author,Organisation/Project,Source,Dataset link,Images,Size in GB,Ground Truth,License,License link,SampleImage,Image Format,DOI,Masks,Description The list includes a large variety of image sets and sizes.From small (
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open-archaeo
software

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CharTool is a macro tool for quantifying charcoal particles for paleoecological research applications. The Charcoal Quantification Tool (CharTool): A suite of open-source tools for quantifying charcoal fragments in archaeological and paleoecological analysis 2020 CharTool is a suite of macro tools for quantifying charcoal fragment metrics and sediment attributes in archaeological, paleoecological, and paleo-fire science contexts. This folder contains ImageJ version 1.52 with CharTool installed...
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open-archaeo
software

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Software to call ROHs hapROH Software to call ROH from ancient and present-day DNA using reference haplotypes.Author: Harald Ringbauer, September 2020Code released under GNU General Public License v3.0 Development Code behind python package hapROH.See https://pypi.org/project/hapROH/ for detail about the current version and installation. This is the git repository for development, as well as code used in the hapROH publication(Preprint at https://doi.org/10.1101/2020.05.31.126912) This code is...
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open-archaeo
software

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Piwigo plugin for viewing 3D models using 3DHOP piwigo-3dhop piwigo-3dhop is a plugin for Piwigo that allows 3D models to be added to galleries and viewed using 3DHOP . 3DHOP currently supports models in .ply and .nxs format. Other files may be added to Piwigo using the "multiple formats" functionality but cannot be viewed directly. Installation From Piwigo The easiest way to install the plugin is from within Piwigo. Search for '3dhop' in the plugin manager, click 'install', and then...
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open-archaeo
software

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:hourglass: Analysis of Chronological Patterns from Archaeological Count Data kairos Overview A toolkit for absolute dating and analysis of chronological patterns.This package includes functions for chronological modeling and dating ofarchaeological assemblages from count data. It allows to compute timepoint estimates (e.g. Mean Ceramic Date) and density estimates of theoccupation and duration of an archaeological site. Initial development is in progress. Installation You can install the...
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open-archaeo
software

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Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology AtlantGIS Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology. All AtlantGIS data are published under a CC-BY-SA 4.0 license. The idea is to create artificial data creatively referring to the story of Atlantis as told by Platon.We believe that simple datasets with a narrative are most qualified to impart knowledge and skills to...
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open-archaeo
software

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The Southwest Taphonomic Protocol swtp This repository contains the data and code for our paper: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). The Southwestern Taphonomic Protocol . In review. How to cite Please cite this compendium as: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). Compendium of R code and data for ‘The Southwestern Taphonomic Protocol’ . Accessed 10 Dec 2020. Contents The :file_folder: paper directory contains:...
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open-archaeo
software

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Allen relations from Bayesian calibration Function determine.allen.relation() Compare two indefinite intervals produced by a Bayesian calibration using the Allen algebra, display a graphical summary of the Allen relation set based on the Nökel lattice, optionally save the graphical summary to a file, and return a list containing the frequency of each basic relation in the Bayesian calibration, the Allen relation set, a statement whether or not the Allen relation set is concurrent, the basic...
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open-archaeo
software

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skyscapeR: an R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. skyscapeR skyscapeR is a open source R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. It is intended to become a fully-fledged, transparent and peer-reviewed package offering a robust set of quantitative methods while retaining simplicity of use. For information on how to use skyscapeR...
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open-archaeo
software

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R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation bleiglas bleiglas is an R package that employs Voro++ for the calculation of threedimensional Voronoi diagrams from input point clouds. This is a specialform of tessellation where each polygon is defined as the area closestto one particular seed point. Voronoi diagrams have useful applicationsin - among others - astronomy, material science or geography andbleiglas provides functions to make 3D tessellation...
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open-archaeo
software

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Harris Matrix Visualization for the web using D3 + KLayJS-D3 Harris Matrix Visualization Converting Harris Matrix Composer XML The command line utility hmc2json.py , written in Python 3.5, will convert Harris Matrix Composer-style GraphML data to JSON Graph Format . Data exported from Harris Matrix Composer is packaged as a zip file with two XML documents: project.xml and matrix.xml . The latter contains the necessary graph data. ```sh$ unzip matrix.hmcx $ ./hmc2json.py matrix.xml matrix.json...
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open-archaeo
software

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A QGIS plugin to simplfy digitization of archaeological plans drawn using the Museum of London Single Context Recording methodology. ARK Spatial A QGIS plugin for Archaeological Recording.Part of the Archaeological Recording Kit by L-P : Archaeologyhttp://ark.lparchaeology.com Installation Currently ARK Spatial must be manually installed via a Git clone and pb_tool. Clone the repository from GitHub: 'git clone https://github.com/lparchaeology/ArkPlan.git' Initialise the Git submodules: 'cd...
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open-archaeo
software

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Bayesian Modeling of Archaeological Chronologies ArchaeoChron Bayesian Modeling of Archaeological Chronologies ArchaeoChron provides a list of functions for the Bayesian modeling of archaeological chronologies. The Bayesian models are implemented in 'JAGS' ('JAGS' stands for Just Another Gibbs Sampler. It is a program for the analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. See http://mcmc-jags.sourceforge.net/ and "JAGS Version 4.3.0 user...
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open-archaeo
by Big-Ancient-Mediterranean
software

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A tool for the geospatial analysis, literary network visualization, and plot mapping of ancient texts To restore the repository download the bundle wget https://archive.org/download/github.com-Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16/Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle and run: git clone Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle Source: https://github.com/Big-Ancient-Mediterranean/BAM Uploader: Big-Ancient-Mediterranean Upload date: 2018-09-16
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open-archaeo
software

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Interchange Tools for Multi-Parameter Spatiotemporal Data mudata2 The mudata2 package provides tools to read, write, and documentmulti-parameter spatiotemporal data. Installation You can install mudata2 from CRAN with: rinstall.packages("mudata2") Or alternatively, you can the development version from github with: ``` r install.packages("remotes") remotes::install_github("paleolimbot/mudata")``` What is mudata? The mudataformat is adata table in a specific form,...
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open-archaeo
software

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R and Stan code for fitting geographic models of artifact class diversity. Artifact Class Diversity This project contains R (www.r-project.org) and Stan (www.mc-stan.org) scripts that estimate artifact class diversity in multiple geographic regions. Point Diversity.R This script requires two csv files: geogdata.csv and point data.csv . The former csv file contains a row for every administrative unit under consideration (e.g., counties, states), with the first column consisting of unique...
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open-archaeo
software

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:globe_with_meridians: Sourcing Archaeological Materials by Chemical Composition nexus Exploration and analysis of compositional data in the framework ofAitchison (1986). This package provides tools for chemicalfingerprinting and source tracking of ancient materials. Initial development is in progress. Installation You can install the released version of nexus from CRAN with: rinstall.packages("nexus") And the development version from GitHub with: ``` r...
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open-archaeo
software

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iDAI.field | Archaeological Field Recording App by the German Archaeological Institute iDAI.field This is a monorepo containing three packages: iDAI.field Desktop : The iDAI.field desktop client based on AngularJS and Electron iDAI.field Mobile : The iDAI.field mobile client based on React Native iDAI.field Core : Shared TypeScript modules Development The repository uses lerna to manage sub-package dependecies.When first checking out the code base, bootstrap the dependencies with: $ npm run...
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open-archaeo
by scollinselliott
software

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Roman Peasant Project Small Finds Ontology Small Finds from Roman Peasant Project (2009-2014): Technical notes on a behavioral analysis of Roman sites in rural Tuscany. Information may also be found at https://volweb.utk.edu/~scolli46/rppsf.html . The code below depends on the following csv files which contain the semantic graph, as the original graph was composed in Gephi and exported: dataset.csv - table of small finds listed by site, phase, and definition, by count and weight. nodes.csv -...
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open-archaeo
software

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An R package that collects together data for the ancient world. Collected Ancient World data sets for R. Install with Sdevtools::install_github("sfsheath/cawd") See the 'data' directory for current list of R objects provided. And run data() in R to see the same but formatted. rmarkdown examples of using cawd See the inst/rmarkdown directory for source code. The following links are to rendered html files in the gh-pages branch of this repository....
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open-archaeo
software

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Element Sourcing in R ElementSourcing Element Sourcing in R This R script is designed to source archaeological artifacts using elemental composition. It is primarily being designed to source obsidian, but I plan to adapt it for broader uses. To restore the repository download the bundle wget https://archive.org/download/github.com-bischrob-ElementSourcing_-_2018-02-06_20-35-44/bischrob-ElementSourcing_-_2018-02-06_20-35-44.bundle and run: git clone...
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open-archaeo
software

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graphical interface for DRAC To restore the repository download the bundle wget https://archive.org/download/github.com-dstreble-shiny_DRAC_-_2016-11-02_16-04-27/dstreble-shiny_DRAC_-_2016-11-02_16-04-27.bundle and run: git clone dstreble-shiny_DRAC_-_2016-11-02_16-04-27.bundle Source: https://github.com/dstreble/shiny_DRAC Uploader: dstreble Upload date: 2016-11-02
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open-archaeo
software

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A web-based application to assist in geocoding of (mainly historical) datasets. Historical Geocoding Assistant Description The “Historical Geocoding Assistant” is an open-sourced browser-based application for assigning geographic coordinates in a more convenient and faster way than copy-pasting them from services such as Google Maps. The application was designed with historical projects in mind but is suitable for any geocoding work Essential Features works online with a live Google...
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open-archaeo
software

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Gianmarco Alberti Miscellaneous GmAMisc (Gianmarco Alberti Miscellaneous) vers 0.24 GmAMisc is a collection of functions that I have built in different points in time. The functions' aim spans from univariate outlier detection, to permutation t test, permutation chi-square test, calculation of Brainerd-Robinson similarity coefficient, validation of logistic regression models, point pattern analysis, and more. The package comes with some toy datasets: assemblage : distribution of 7...
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open-archaeo
software

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gargammel is an ancient DNA simulator gargammel: simulations of ancient DNA datasets gargammel is a set of programs aimed at simulating ancient DNA fragments. For ancient hominin samplesour program can also simulate various levels of present-day human contamination and microbial contamination. The website for gargammel can be found here: https://grenaud.github.io/gargammel/ Questions/bug report/feature requests : If you have Github account, consider creating an issue, you will help others who...
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open-archaeo
software

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R package for aoristic analysis aoristic The goal of aoristic is to make sense of temporally vague data. It cansometimes be difficult to ascertain when some events (such as propertycrime) occur because the victim is not present when the crime happens Asa result, police databases often record a start (or from ) date andtime, and an end (or to ) date and time. The start datetime usuallyreferences when the victim last saw their stolen property, and the to date-time records when they first...
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open-archaeo
software

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A repository listing Museums active on GitHub, written in Rstats Museums on Github This repository provides CSV raw data for museums active on Github. The following files are included from the GitHub api (accessed via authenticated requests): A list of museums with basic info A list of museum github api urls A list of museum extended github data (bio, repo numbers etc) To restore the repository download the bundle wget...
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open-archaeo
software

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Development version of the R package 'Luminescence' Luminesence The R package ‘Luminescence’ by the R-Luminescence Group provides acollection of various R functions for luminescence dating data analysis. Social media and other resources Follow us on or visit our R-Luminescence homepage . Installation i. Requirements Windows (32/64bit) : Rtools (providedby CRAN) macOS : Xcode (provided by Apple) Linux : gcc often comes pre-installed inmost distributions. ii. Install the package Install any...
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open-archaeo
software

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Script for calculating mean ceramic dates based on tabular data. This script also estimates sampling error using a bootstrapping procedure. Mean-Ceramic-Date-and-Error-Estimation Script for calculating mean ceramic dates based on tabular data. This script also estimates sampling error using a bootstrapping procedure. Mean Ceramic Dates:The mean ceramic date (MCD) of an assemblage is a point estimate of the occupation of a site calculated based on the frequency and date range of types present,...
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open-archaeo
software

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Yet Another Demographic Analysis package yada yada , which stands for Yet Another Demographic Analysis package,supports a variety of demographic tasks, with most applications drawnfrom forensic anthroplogy and archaeology. Installation You can install yada with: rdevtools::install_github("eehh-stanford/yada") Contributing Please note that the ‘yada’ project is released with a Contributor Codeof Conduct . By contributing to thisproject, you agree to abide by its terms. To restore...
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open-archaeo
software

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Models and Utility Functions for Bayesian Analyses of Radiocarbon Dates with NIMBLE nimbleCarbon The nimbleCarbon package provides utility functions and bespoke probability distributions for the Bayesian analyses of radiocarbon dates using the NIMBLE framework. The package is particularly suited for demographic inferences based on changing frequencies of radiocarbon dates and enables parameter estimations and model comparison for the following population growth models (see Crema and Shoda 2021...
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None R-Scripts This contains a set of data about human mobility, subsistance, population, and environmental productivity derived from the Standard Cross Cultural Sample . Missing cases have been filled in via Multiple Imputation. It also contains a suite of R scripts for processing these data. Included routines are cluster analyses, Multidimentional Scaling, and Canonical Correspondence analysis. Plotting commands are also included. These data and analyses were used in my article "Towards...
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paleofire package paleofire paleofire: an R package to analyse sedimentary charcoal records from the Global Charcoal Database to reconstruct past biomass burning The paleofire package provides tools to extract and analyse charcoal sedimentary data stored in the Global Charcoal Database (see http://gpwg.paleofire.org for details). Main functionalities includes data extraction and sites selection, transformation and homogenization of the charcoal records as well as regional to global compositing....
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None AuthentiCT is a command-line tool to estimate the proportion of present-day DNA contamination in ancient DNA datasets generated from single-stranded libraries.It estimates contamination using an ancient DNA damage model and assumes that the contaminant is not deaminated. Installation: AuthentiCT requires Python 3.6+ and relies on a number of non-standard libraries. Here is the list of these dependencies with the versions that we used:- numpy (version 1.17.3)- numdifftools (version 0.9.39)-...
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Dataset of 10,647 radiocarbon dates from the Near East from the Late Pleistocene until the Late Holocene (ca. 14 - 2 kya BP). NERD (Near East Radiocarbon Dates) Alessio Palmisano, Andrew Bevan, Dan Lawrence & Stephen Shennan The archive NERD provides a collation of 10,647 radiocarbon dates from 999 archaeological sites in the Near East from the Late Pleistocene until the Late Holocene (ca. 14 - 2 kya). These dates have been collected from existing online digital archives, and electronic and...
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A directory of GitHub projects by OR for archaeologists Archaeology @ GitHub This is a directory of GitHub projects by OR for archaeologists. Submit pull requests to add new projects. Of course, you can also submit links to git repos elsewhere, or to Mercurial repos, etc. The focus of this directory is not on the software per se , but rather on the fact that git is used to develop and share source code, literate programming resources, archaeological data, etc. Stuff seen at #caasiena (not...
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Southwest Asian Palaeoarchaeology Data S outh w est A sian P alaeoarchaeology Data A collection of archaeological datasets and tools related to the prehistory of Southwest Asia. Installation You can install the development version of swapdata from GitHub using the remotes package : rremotes::install_github("joeroe/swapdata") To restore the repository download the bundle wget...
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INSIGHT has written several tools for Paolo Cignoni's Meshlab; these tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Meshlab Tools for Epigraphers These tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Before producing final plates for publication from 3D models, we find it...
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CRAN Task View: Archaeological Science CRAN Task View: Archaeological Science Maintainer: Ben Marwick Contact: benmarwick at gmail.com Version: 2020-12-26 This CRAN Task View contains a list of packages useful for scientific work in Archaeology, grouped by topic. Note that this is not an official CRAN Task View, just one I have prepared for my own convenience, so it includes some packages only on GitHub and other non-CRAN resources I find useful. Many of the most highly recommended packages...
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A dataset and discussion relating to Roman amphitheaters Most recent draft release: Permanent DOI for link to all versions: https://doi.org/10.5281/zenodo.596149 roman-amphitheaters Edited by Sebastian Heath Table of Contents Introduction Diversity within the set A Network Approach to Density Introduction roman-amphitheaters is a dataset published in conjunction with figures and discussion that has the goal of facilitating the study of amphitheaters in the Roman world. For the purposes of this...
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Bayesian reconstruction of ancient DNA fragments leeHom: Bayesian reconstruction of ancient DNA fragments QUESTIONS: gabriel [dot] reno [ at sign ] gmail.com About leeHom is a program for the Bayesian reconstruction of ancient DNA (the binary is mergeTrimReadsBAM). Downloading: Go to https://github.com/grenaud/leeHom and do one of the following: Clone the repository: git clone --recursive https://github.com/grenaud/leeHom.git Download the ZIP archive and then manually download the submodules...
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Importing Data from iDAI.field 2 into R idaifieldR idaifieldR imports data from the iDAI.field 2 database into R. The core functions of this package use sofa (available on CRAN) to connect to a running iDAI.field 2-client and store the whole database in a list in R (in memory), avoiding the csv-export that would otherwise be needed and gathering all documents at once, which is not possible with said csv-export. Any R-Script using idaifieldR to import the database can be re-run and updated with...
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Dédalo: Cultural Heritage & Oral History Management System To restore the repository download the bundle wget https://archive.org/download/github.com-renderpci-dedalo_-_2021-01-16_08-50-03/renderpci-dedalo_-_2021-01-16_08-50-03.bundle and run: git clone renderpci-dedalo_-_2021-01-16_08-50-03.bundle Source: https://github.com/renderpci/dedalo Uploader: renderpci Upload date: 2021-01-16
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None Introduction to Analysing Archaeological Radiocabon Ages Using R Ben Marwick, July 2020 Overview In this workshop we will practice some techniques for analysingarchaeological radiocabon ages using R. Here are the slides . Here’s the outline of keytopics: Calibrate and plot a single age Calibrate and plot multiple ages Combine and plot multiple ages using non-parametric phase estimation Age-depth modelling Summed probability density plots Hypothesis testing with SPDs You can download the...
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Code repository of the book by Oliver Nakoinz and Daniel Knitter "Modelling Human Behaviour in Landscapes -- Basic concepts and modelling elements" mhbil Code repository of the book by Oliver Nakoinz and Daniel Knitter "Modelling Human Behaviour in Landscapes -- Basic concepts and modelling elements" published by Springer in 2016. You can get the book here: at Springer Worldcat link What will you find here? the code of the different chapters the data used within the book Why...
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The R-script implements a means for statistically assessing the degree of co-occurrence between classes within a dataset based on an idea origially suggested by James Allison at BYU and published by Keith Kintigh in 2006. Binomial-Co-occurrence-Assessment The R-script implements a means for statistically assessing the degree of co-occurrence between classes within a dataset based on an idea origially suggested by James Allison at BYU and published by Keith Kintigh in 2006. I have implemented...
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An R package for the extraction, analysis and classification of (not only) archaeological objects from scanned images shapAAR This is an R package for the extraction, analysis and classification of (not only) archaeological objects derived from scanned images. Especially it aims at the analysis of the shapes/profiles of eg. ceramic vessels or arrow heads. Currently the extraction is implemented using active contour to identify and extract the shape informations. You can get an idea about its...
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Method for dating admixture in ancient DNA specimens DATES DATES (Distribution of Ancestry Tracts of Evolutionary Signals) is a method to estimate the time of admixture in ancient DNA samples described in Narasimhan, Patterson et al. 2018 Installation To make the DATES executable, you will need the following libraries: GSL 2.5 (https://www.gnu.org/software/gsl/)OpenBLAS 0.2.20 (www.openblas.net)FFTW 3.3.8 (http://www.fftw.org/download.html)````You will need to edit the file ``Makefile`` and...
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Sketch of a look at the 'grand challenges' of Kintigh et al. 2014 (http://www.pnas.org/content/111/3/879.full) in five archaeology journals To restore the repository download the bundle wget https://archive.org/download/gist.github.com-d3eb3167ccb2116197ca_-_2015-08-29_14-00-53/d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle and run: git clone d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle Source: https://gist.github.com/d3eb3167ccb2116197ca Uploader: benmarwick Upload date: 2015-08-29
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Analogue and weighted averaging methods for palaeoecology analogue Released version Build status | Linux | Windows | Codecov || ----- | ------- | ------- || | | | What is analogue? analogue is an R package for use with palaeoecological data. Originally, analogue was intended as an R implementation of analogue methods such as analogue matching, ROC curves, and MAT transfer function models, and the computation of dissimilarity coefficients. Since then the scope of the package has grown to include...
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R Package - Reconstruct Paths using Archaeological Monuments & Model Parameters of Infrastructure pathAAR R Package to reconstruct paths using archaeological monuments, model parameters of infrastructure and evaluate those parameters Archaeological remains of roads or infrastructure are rarely found, especially in earlier epochs. Usually, most premodern paths have been country lanes, which might be paved when needed. Hence, their preservation is linked to specific conditions, like...
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None Senscape Senscape is a toolbox for modelling human perception of topography for QGIS, based on QGIS viewshed module . It is a subclass of QGIS processing framework and can be readily used in custom models or scripts. The plugin is in experimental phase. To install: 1. Search for “Senscape” in QGIS plugin manager (make sure experimental plugins are allowed)2. In Processing menu, under Options, allow Senscape provider For manual instalation see QGIS viewshed module . Files should be...
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Presentation frontend for archaeological data from OpenAtlas databases About THANADOS is an open source, web application for the presentation of archaeological data especially for burial studies.It started within the MEDCEM project and actively carries on the development of this application. See examples at THANADOS or MEDCEM The data is based on the OpenAtlas application The information is mapped as a network using classes and properties of the CIDOC CRM . Documentation: Wiki , Issues ,...
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Preparation of Object Dating Ranges for Density Plots datplot Converting date ranges into dating 'steps' eases the visualization of changes in e.g. pottery consumption, style and other variables over time. This package provides tools to process and prepare data for visualization. A rather common problem in archaeology is the fuzzyness of dates assigned to objects. If one wants to visualize overall changes in - let's say - pottery consumption, bar charts often fall short in that regard. If,...
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Tidy tools for paleoenvironmental archives tidypaleo Working with multi-proxy paleo-archive data can be difficult. There aremultiple locations, multiple parameters, and a lot ofdiscipline-specific norms for plot layout and notation. This packagesimplifies a few workflows to promote the use of R for reproducibledocuments in paleo-based studies. Installation You can install tidypaleo from GitHub with: ``` r install.packages("remotes")...
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R package for the analysis of the fragmentation of archeological objects Archeofrag an R package for refitting and stratigraphic analysis in archeology Installation Archeofrag reference version can be installed from CRAN with: rinstall.packages("archeofrag") Alternatively, the development version, which includes the last changes and fixes, can be installed from GitHub with: ```r install.packages("devtools")...
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QGIS plugin to transforms profile control points for fotogrammetric rectification from archaeological excavations. profileAAR A python PluginThe plugin profileAAR transforms profile control points for fotogrammetric rectification of profile images of archaeological excavations How to use profileAAR After installing and opening the plugin there is a "?"-Button in the Plugin. There you will find additional informations. QGIS 3 Install Qgis3 >3.6.0 You will find the Plugin in the...
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:art: Colour Schemes for Scientific Data Visualization khroma Overview Color blindness affects a large number of individuals. Whencommunicating scientific results colour palettes must therefore becarefully chosen to be accessible to all readers. This R package provides an implementation of Paul Tol[1] and Okabe andIto[2] colour schemes. These schemes are ready for each type of data(qualitative, diverging or sequential), with colours that are distinctfor all people, including colour-blind...
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by stefanieschneider
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An Online Tool for the Comparative Analysis of Museum Databases MAX – Museum Analytics Overview In recent years, large museum databases have been created in the international museum sector that are awaiting meaningful use. They offer a hitherto unknown opportunity for empirical investigation of the history of collections, which can be expected to yield far-reaching results, especially in a comparative perspective. Museum Analytics , MAX , is intended to enable lecturers to import freely...
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Largest Empty Circles after Andreas Zimmermann Largest Empty Circles (LEC) after Zimmermann and Wendt. Tool for calculating the largest empty circles and estimation of archaeological sites theoretically to be expected in region of interest. This package is an implementation of the method published by Andreas Zimmermann and Karl Peter Wendt (Zimmermann/Wendt 2003). Method to do Installation if(!require('devtools')) install.packages('devtools')devtools::install_github("ISAAKiel/lecAAR")...
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Tasks for Excavations in AutoCAD ArchJobCAD This repository comprises three LISP-functions for repeated tasks in archaeological excavations. The aims are efficient work and a homogeneous structure for easy retrieval. This is achieved with standardised named layers for filtering and the extensive use of blocks with attributes including labels of features, finds and profiles. The detailed explanations are in German but the code includes German as well as English comments. The functions are:...
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by Johanna-Mestorf-Academy
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R Shiny App - Exploration and visualization of SDS datasets (Systematic and digital documentation of stone artefacts) sdsbrowser: sds.ufg.uni-kiel.de What is SDS? SDS ( Systematic and Digital Documentation of Stone Artefacts ) [1] is a recording system for stone artefacts. It was created as an uniform coding and standardized listing system of conventional attributes recorded at lithic inventories to enable well structured, quantitative, and comparative analysis. The variable collection in SDS...
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Peer reviewed and indexed articles published on Caddo archaeology since 2000. caddonet Peer reviewed and indexed articles published on Caddo archaeology since 2000. To restore the repository download the bundle wget https://archive.org/download/github.com-aksel-blaise-caddonet_-_2020-04-03_11-10-46/aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle and run: git clone aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle Source: https://github.com/aksel-blaise/caddonet Uploader: aksel-blaise Upload...
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An online space for sharing data, 3d models, etc about archaeological objects to enable the comparison of these objects. Archaoeological Object Sharing The goal of this project is to create a web space for the collaborative sharing of archaeological objects. The users would be able to upload data, photographs, and 3d models of objects from archaeological excavations and surveys. Material could include pottery sherds, stone tools, bones, etc. The ultimate aim is that this forms a place where...
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R package for tidy radiocarbon data c14 c14 provides basic classes and functions for radiocarbon data in R.It makes it easier to combine methods from several existing packages(e.g. rcarbon, Bchron, oxcAAR, c14bazAAR, ArchaeoPhases, stratigraphr)together and work with them in a tidy data workflow. It was forked from stratigraphr v0.3.0. Installation You can install the development version of c14 from GitHub: ``` r install.packages("devtools")...
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Room Accumulation Simulation ro estimate archaeological population growth rates ReadMe.txt Documentation provided in RoomAccumDocumentation.pdf Licence provided in License.txt Source code RoomAccumXX.dpr Program Source Code KWKStdXE.pas Utility functions called by the program Compiled Windows version RoomAccumXX.exe
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Repository of Crop Origins database and Phylo Food phylogeny Crop Origins is a comprehensive ckecklist of crop species cultivated for food. It includes species-level data on diverse continuous and categorical descriptors of antiquity of cultivation, organ harvested for primary use, growth form, and identities, distribution and climate at sites of origin of crops´ wild progenitors. Phylo Food is a time-calibrated and fully resolved phylogenetic tree of the species in Crop Origins. Downloads:...
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Maya Calendar Tools Tools for converting between Maya and Western calendars. The Classic Maya developed the most sophisticated system for keeping track of time in the New World. In this app, you can convert dates from the Maya Calendar (Long Count and Calendar Round) to the Gregorian or Julian Calendars and vice-versa. You can also check the Maya glyphs for the current date. This is a React-Redux version of the Long Count tool in an older Vanilla app . Go to Web App To restore the repository...
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Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies To restore the repository download the bundle wget https://archive.org/download/github.com-marieannevibet-ArchaeoPhases_-_2018-07-26_09-58-23/marieannevibet-ArchaeoPhases_-_2018-07-26_09-58-23.bundle and run: git clone marieannevibet-ArchaeoPhases_-_2018-07-26_09-58-23.bundle Source: https://github.com/marieannevibet/ArchaeoPhases Uploader: marieannevibet Upload...
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Infrastructure for Ordering using Seriation - R Package seriation - Infrastructure for Ordering Objects Using Seriation - R package This package provides the infrastructure for ordering objects with an implementation of several seriation /sequencing/ ordination techniques to reorder matrices, dissimilaritymatrices, and dendrograms (see below for a full list). Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, andvisual assessment...
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This R Function creates a simple Ford diagram for archaeological seriation with error bars determined based on sample size where count data are given. Ford-Diagram This R Function creates a simple Ford diagram for archaeological seriation with error bars determined based on sample size where count data are given. To restore the repository download the bundle wget...
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Interface for 14C-Database CalPal CalPal-Database CalPal 14C-Database created by Bernhard Weninger (Universität zu Köln) as part of the CalPal software package. This repository serves as an interface to access the data more easily. To restore the repository download the bundle wget https://archive.org/download/github.com-nevrome-CalPal-Database_-_2020-08-30_12-27-59/nevrome-CalPal-Database_-_2020-08-30_12-27-59.bundle and run: git clone nevrome-CalPal-Database_-_2020-08-30_12-27-59.bundle...
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A GNU Octave toolkit for analyzing diaphyseal long bone cross sectional geometry long-bone-diaphyseal-CSG-Toolkit A GNU Octave toolkit for analyzing diaphyseal long bone cross sectional geometry The present set of GNU Octave functions provides a novel and robust algorithm foranalyzing the diaphyseal cross-sectional geometric properties of long bones, whichcan be applied to any 3D digital model of a humerus, femur or tibia bone representedas a triangular mesh in a Wavefront OBJ file format. The...
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Radiocarbon Dating Resolution Calculator Res14C Radiocarbon Dating Resolution Calculator Overview A python implementation of the method of calculating radiocarbon dating resolution. For an overview of the method see: Svetlik, I., A. J. T. Jull, M. Molnár, P. P. Povinec, T. Kolář, P. Demján, K. Pachnerova Brabcova, et al. “The Best Possible Time Resolution: How Precise Could a Radiocarbon Dating Method Be?” Radiocarbon 61, no. 6 (December 2019): 1729–40....
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Installer files for Cherish software Installer files for Cherish software Requirements Windows platform. Qt Installer Framework (can be installed through Qt Maintenance Tool). Installer generation First, make sure the packages contains the latest archive of the software distribution. Use archivegen to create and place the *.7z file, e.g.: archivegen.exe cheris.7z cherish_directory The archive file has to be placed in \packages\...\data folder. Second, once the cherish software is updated and...
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Modelling and feature detection in palaeoenvironmental time series using additive models Modelling and feature detection in palaeoenvironmental time series using additive models Code and text for manuscript describing my additive modelling approach to modelling palaeoenvironmental time series and detecting periods of significant change in palaeo data. To restore the repository download the bundle wget...
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Roman amphitheater data as R package. See http://github.com/sfsheath/roman-amphitheaters ramphs Roman amphitheater data as R package. See http://github.com/sfsheath/roman-amphitheaters Install with: install_github('sfsheath/ramphs') # requires devtools package. Then: data(ramphs, package = 'ramphs')ramphs$title # for example / to confirm it worked To restore the repository download the bundle wget...
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