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open-archaeo
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Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric CIRV Ceramic_Dashboard Dashboard showing ceramic EDA and interaction network construction in the Late Prehistoric Central Illinois River Valley (CIRV). To learn more about the Late Prehistoric CIRV, take a look at The Mississippian Period and The Late Mississippian Period in this pdf document. This flexdashboard is a companion to Chapter 6 of the recently completed dissertation by Andrew Upton at Michigan...
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open-archaeo
software

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Datasets used in Binford's 2001 book "Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets" binford This package contains datasets used in: Binford, Lewis R. 2001. Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets University of California Press, Berkeley. This package contains three datasets: LRB : environmental and...
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open-archaeo
software

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Management system for physical storage of archaeological finds (ARCHIVED) To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-nervia_-_2020-06-22_07-37-06/steko-nervia_-_2020-06-22_07-37-06.bundle and run: git clone steko-nervia_-_2020-06-22_07-37-06.bundle Source: https://codeberg.org/steko/nervia Uploader: steko Upload date: 2020-06-22
Topics: Codeberg, code, software, git
open-archaeo
software

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Map of the Roman Empire made with vector tiles Roman Empire Roman Empire Map made with vector tiles :globe with meridians: Browse the map Edit online Blog posts: http://commons.pelagios.org/2017/11/building-the-roman-empire-vector-tile-map/ http://commons.pelagios.org/2017/09/rdg-update-the-roman-empire-vector-map-project/ More information at: Source: Digital Atlas of the Roman Empire Further information at OpenMapTiles.org To restore the repository download the bundle wget...
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open-archaeo
software

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A Bayesian radiocarbon chronology model with R New: Bchron website Bchron is a Bayesian chronology model implemented in R. The package enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine...
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open-archaeo
software

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R Package - Quantitative Analysis in Archaeology quantAAR quantAAR contains tidy wrappers and useful utility function for common applications of exploratory statistics in archaeology: Wrapper functions: Correspondence Analysis : ca.ca_ca ( ca::ca ), ca.vegan_cca ( vegan::cca ) Principal Components Analysis : pca.stats_prcomp ( stats::prcomp ), pca.vegan_rda ( vegan::rda ) Seriation : seriation.seriation_seriate ( seriation::seriate ), seriation.tabula_seriate ( tabula::seriate ) Principal...
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open-archaeo
software

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Iterative Deterministic Seriation Solution Seriation Algorithms, implementations, manuscripts, and test cases for iterative deterministic frequency seriation done by agglomeration. These algorithms are intended to automate and extend the initial, mainly manual implementation of IDSS in Lipo (2001). commandline: python ./IDSS.py --inputfile=../testdata/pfg.txt --xyfile=../testdata/pfgXY.txt --largestonly=1 --mst=1 --screen=1 as a module: import IDSSseriation= IDSS() args={}args['inputfile']...
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open-archaeo
software

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A digital Babylonian clock babylonian-hours This is a javascript based digital clock which computes your local time in 'seasonal-hours'. It's currently hosted at www.babylonianhours.com . To restore the repository download the bundle wget https://archive.org/download/github.com-willismonroe-babylonian-hours_-_2019-01-05_20-36-50/willismonroe-babylonian-hours_-_2019-01-05_20-36-50.bundle and run: git clone willismonroe-babylonian-hours_-_2019-01-05_20-36-50.bundle Source:...
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open-archaeo
software

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Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility LA ICP MS-Routines_FMNH Routines to read and analyze LA-ICP-MS data from the Field Museum's Elemental Analysis Facility Significant contributions include:- Reading in large amounts of cleaned LA-ICP-MS data from xlsx files with each day as a separate sheet- Tidying the LA-ICP-MS data into a tidy data frame- Functions for converting elements calculated as % oxide to ppm- Writing the file to a csv in...
Topics: GitHub, code, software, git
open-archaeo
by Landesamt-fuer-Archaeologie-Sachsen
software

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QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS_arch QGIS plugin for documentation of archaeological features using Tachy2GIS Tachy2GIS arch (T2G arch) is a QGIS plugin that serves as application module for archaeological on-site documentation. It is designed to work with the forked Tachy2GIS plugin. T2g_arch aims to provide functions for an effective workflow with a focus on on-site documentation of geometries using a total station. The plugin is designed to...
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open-archaeo
software

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Data from Uerpmann 1987, The Ancient Distribution of Ungulate Mammals in the Middle East, TAVO A27 Uerpmann 1987, The Ancient Distribution of Ungulate Mammals in the Middle East , TAVO A27 This repository contains data from Uerpmann’s (1987), The AncientDistribution of Ungulate Mammals in the MiddleEast ,volume 27 of the Tübinger Atlas des Vorderen Orients (TAVO), Series A. Uerpmann catalogued the occurrence of ungulate taxa in animal boneassemblages from 196 sites across the Middle East,...
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open-archaeo
software

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R-script for conducting and evaluating bootstrapped correspondence analyses following methods published by Peeples and Schachner (2012) in the Journal of Archaeological Science Bootstrap-Correspondence-Analysis R-script for conducting and evaluating bootstrapped correspondence analyses following methods published by Peeples and Schachner (2012) in the Journal of Archaeological Science This code relates to the following article: Peeples, Matthew A. and Gregson Schachner2012 Refining...
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open-archaeo
software

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Script for conducting K-means cluster analysis using R. This script provides output designed to help the user select an appropriate cluster solution. Kmeans Script for conducting K-means cluster analysis using R. This script provides output designed to help the user select an appropriate cluster solution. K-means Cluster Analysis:K-means analysis is a divisive, non-hierarchical method of defining clusters. This is an iterative process, which means that at each step the membership of each...
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open-archaeo
software

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Collection of 250+ datasets for photogrammetry Photogrammetry Datasets This is a collection of datasets for photogrammetry. A csv-table with 350+ datasets can be downloaded from this repository: datasets.csv . Contents Dataset,Camera,Category,Author,Organisation/Project,Source,Dataset link,Images,Size in GB,Ground Truth,License,License link,SampleImage,Image Format,DOI,Masks,Description The list includes a large variety of image sets and sizes.From small (
Topics: GitHub, code, software, git
open-archaeo
software

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Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data cranial-sex-estimation-code Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data To reimplement the analysis grab the morphometric feature dataset from https://zenodo.org/record/3632180 and save the relevant files into the corresponding folders. Keep the current directory structure and from within GNU Octave command window enter the ./analysis...
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open-archaeo
software

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A dataset of Roman amphitheaters. About 'roman-amphitheaters' is a digital resource that collects information about Roman amphitheaters with a primary goal being the easy use of its data in a wide variety of computational environments. It is designed to support open-ended inquiry into the place and role of amphitheaters in the Roman Empire. The file 'roman-amphitheaters.geojson' holds the latest information and is the source for other derived files, including 'roman-amphitheaters.csv' and the...
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open-archaeo
software

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Synthetic Categories for Archaeological Vessel Comparison synthkat Synthetic Categories for Archaeological Vessel Comparison Synthkat is a computational initiative to construct flexible, synthetic categories of established ceramic and glass vessel classifications and typologies of the ancient Roman world. It will take a collection of different vessel-types, expressed as a set of attributes, and recategorize them to allow for cross-project comparison of assemblages. Project files and algorithms...
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open-archaeo
software

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A page for video tutorials on R, specifically for archaeology To restore the repository download the bundle wget https://archive.org/download/github.com-MartinHinz-vitutr_-_2019-07-10_07-18-25/MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle and run: git clone MartinHinz-vitutr_-_2019-07-10_07-18-25.bundle Source: https://github.com/MartinHinz/vitutr Uploader: MartinHinz Upload date: 2019-07-10
Topics: GitHub, code, software, git
open-archaeo
software

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Bindings to the tDAR API tdar This package allows programmatic access to the Digital ArchaeologicalRecord (tDAR) , a service of DigitalAntiquity . Installation You can install tdar from github with: # install.packages("devtools")devtools::install_github("bocinsky/tdar") Please note that this project is released with a Contributor Code ofConduct . By participating in this project you agree toabide by its terms. Basic usage Authentication tDAR authentication is handled through...
Topics: GitHub, code, software, git
open-archaeo
software

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Plugin for drawing trenches To restore the repository download the bundle wget https://archive.org/download/github.com-MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06/MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle and run: git clone MikeJJohnson-trenchdrawer_-_2016-05-10_08-42-06.bundle Source: https://github.com/MikeJJohnson/trenchdrawer Uploader: MikeJJohnson Upload date: 2016-05-10
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open-archaeo
software

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None zoolog : Zooarchaeological Analysis with Log-Ratios Jose M Pozo , Silvia Valenzuela-Lamas , Angela Trentacoste , Ariadna Nieto-Espinet and Silvia Guimarães Chiarelli The R package zoolog includes functions and reference data togenerate and manipulate log-ratios (also known as log size index (LSI)values) from measurements obtained on zooarchaeological material. Logratios are used to compare the relative (rather than the absolute)dimensions of animals from archaeological contexts (Meadow...
Topics: GitHub, code, software, git
open-archaeo
by msu-anthropology
software

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Digital Encyclopedia of Archaeologists deoa Digital Encyclopedia of Archaeologists To restore the repository download the bundle wget https://archive.org/download/github.com-msu-anthropology-deoa_-_2017-11-29_06-22-59/msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle and run: git clone msu-anthropology-deoa_-_2017-11-29_06-22-59.bundle Source: https://github.com/msu-anthropology/deoa Uploader: msu-anthropology Upload date: 2017-11-29
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open-archaeo
software

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Quantum GIS plugin for visibility analysis Advanced viewshed analysis for QGIS Version: 1.2 Supported QGIS version: 3.x Licence: GNU GPLv3 Documentation : zoran-cuckovic.github.io/QGIS-visibility-analysis/ Author: Zoran Čučković ( web page ) Introduction: Viewshed analysis plugin for QGIS calculates visible surface from a given observer point over a digital elevation model. The plugin is intended for more complex modelling, such as the depth below the visible horizon or generation of...
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open-archaeo
software

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An R package to simulate species occurences and abundances (counts) along gradients coenocliner Released version Build status What is coenocliner? An R package to simulate species abundances (counts) along gradients One of the key ways quantitative ecologists attempt to understand the properties and behaviour of the methods they use or dream up is through the use of simulated data. There are a number of computer programmes for simulating ecological data along gradients, such as Peter Minchin's...
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open-archaeo
software

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R package for spatial sampling and survey simulation fieldwalkr fieldwalkr is a tool for designing and evaluating sampling strategies in spatial survey ( fieldwalking in archaeological jargon).It contains functions for simulating the effect of different survey units, sampling methods and detection functions on the estimation of randomly generated or observed point processes. Installation {r}devtools::install_github("joeroe/fieldwalkr") Demo An introduction to and short demonstration...
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open-archaeo
software

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Software to call ROHs hapROH Software to call ROH from ancient and present-day DNA using reference haplotypes.Author: Harald Ringbauer, September 2020Code released under GNU General Public License v3.0 Development Code behind python package hapROH.See https://pypi.org/project/hapROH/ for detail about the current version and installation. This is the git repository for development, as well as code used in the hapROH publication(Preprint at https://doi.org/10.1101/2020.05.31.126912) This code is...
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open-archaeo
software

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Piwigo plugin for viewing 3D models using 3DHOP piwigo-3dhop piwigo-3dhop is a plugin for Piwigo that allows 3D models to be added to galleries and viewed using 3DHOP . 3DHOP currently supports models in .ply and .nxs format. Other files may be added to Piwigo using the "multiple formats" functionality but cannot be viewed directly. Installation From Piwigo The easiest way to install the plugin is from within Piwigo. Search for '3dhop' in the plugin manager, click 'install', and then...
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open-archaeo
software

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:hourglass: Analysis of Chronological Patterns from Archaeological Count Data kairos Overview A toolkit for absolute dating and analysis of chronological patterns.This package includes functions for chronological modeling and dating ofarchaeological assemblages from count data. It allows to compute timepoint estimates (e.g. Mean Ceramic Date) and density estimates of theoccupation and duration of an archaeological site. Initial development is in progress. Installation You can install the...
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open-archaeo
software

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Sketch of a look at the 'grand challenges' of Kintigh et al. 2014 (http://www.pnas.org/content/111/3/879.full) in five archaeology journals To restore the repository download the bundle wget https://archive.org/download/gist.github.com-d3eb3167ccb2116197ca_-_2015-08-29_14-00-53/d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle and run: git clone d3eb3167ccb2116197ca_-_2015-08-29_14-00-53.bundle Source: https://gist.github.com/d3eb3167ccb2116197ca Uploader: benmarwick Upload date: 2015-08-29
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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CharTool is a macro tool for quantifying charcoal particles for paleoecological research applications. The Charcoal Quantification Tool (CharTool): A suite of open-source tools for quantifying charcoal fragments in archaeological and paleoecological analysis 2020 CharTool is a suite of macro tools for quantifying charcoal fragment metrics and sediment attributes in archaeological, paleoecological, and paleo-fire science contexts. This folder contains ImageJ version 1.52 with CharTool installed...
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open-archaeo
software

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None A collection of texts, 3d models, and maybe other resources useful for teaching about the Roman Empire. gh-pages versions: http://sebastianheath.com/teaching-rome/open-university-intro http://sebastianheath.com/teaching-rome/identify-imperial-portraits/ To restore the repository download the bundle wget https://archive.org/download/github.com-sfsheath-teaching-rome_-_2017-09-21_03-53-33/sfsheath-teaching-rome_-_2017-09-21_03-53-33.bundle and run: git clone...
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open-archaeo
by andredebuisne
software

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Archaeological Information System AIS - Archaeological Information System Created by Andre Debuisne - 2017 Written in C++ with Qt library A packaged .exe will be uploaded soon Current state of the AIS Current functionnalities : Create an archaeological site (.archeo) Create a layer (.arcus) Create an object Create a horizon Modify site, horizon, layer or object Delete site, horizon, layer or object I am working on : Harris Matrix Data table view Site sectors To restore the repository download...
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open-archaeo
software

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None HOPS Summary ## HOPS is a java pipeline which focuses on screening MALT data (see Table of Contents) for the presence of a user-specified list of target species. The pipeline essentially exists to make it easier to use MALT and MaltExtract in unison. To use HOPS you will need a config file, which specifies some key parameters for MALT and MaltExtract. You can have multiple config files to quickly redo a previous analysis or archive them to remember parameters you used in an analysis. HOPS...
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open-archaeo
software

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A set of GNU Octave functions for biodistance analysis based on non-metric traits To restore the repository download the bundle wget https://archive.org/download/github.com-pr0m1th3as-non-metric-trait-analysis_-_2018-03-08_14-05-12/pr0m1th3as-non-metric-trait-analysis_-_2018-03-08_14-05-12.bundle and run: git clone pr0m1th3as-non-metric-trait-analysis_-_2018-03-08_14-05-12.bundle Source: https://github.com/pr0m1th3as/non-metric-trait-analysis Uploader: pr0m1th3as Upload date: 2018-03-08
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open-archaeo
software

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A toolset to work with modular genotype databases poseidon-tools A toolset to work with modular genotype databases formatted using Poseidon. The main executable within this package is called trident . Installation Quickstart Guide for the command line utility Poseidon package repositories Analysing your own dataset outside of the main repository Package creation and manipulation commands : init , forge , update Inspection commands : list , summarise , survey , validate Analysis commands :...
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open-archaeo
software

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Android apps for archaeology that enable photography during field work, with resulting photographs named and located on the filesystem based on information from a relational database. Disclaimer: This application was coded by an inexpensive freelance company. It was written quickly and for a very specific purpose, and it has fulfilled this purpose during multiple archaeological field seasons. However, the quality of the code leaves much to be desired and the application could be more robust....
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open-archaeo
software

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None predictSource The package predictSource provides functions to verify that data can beused to separate sources of samples, to predict the sources ofadditional samples, and to create plots that evaluate the validity ofthe predictions. Data can be both quantitative and qualitative. Aproposed analysis strategy is to use random forests to evaluate whetherthe data can separate the sources and to identify the most importantpredictors if there are many, use a classification tree to understandhow...
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open-archaeo
software

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A collection of tutorial on agent-based modelling for archaeologists To restore the repository download the bundle wget https://archive.org/download/github.com-izaromanowska-ABM_tutorials_-_2019-06-21_13-17-40/izaromanowska-ABM_tutorials_-_2019-06-21_13-17-40.bundle and run: git clone izaromanowska-ABM_tutorials_-_2019-06-21_13-17-40.bundle Source: https://github.com/izaromanowska/ABM_tutorials Uploader: izaromanowska Upload date: 2019-06-21
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open-archaeo
software

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A git mirror of the tridas SVN repository from https://sourceforge.net/projects/tridas/ To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-tridas_-_2020-02-10_16-10-11/steko-tridas_-_2020-02-10_16-10-11.bundle and run: git clone steko-tridas_-_2020-02-10_16-10-11.bundle Source: https://codeberg.org/steko/tridas Uploader: steko Upload date: 2020-02-10
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open-archaeo
software

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Proof of concept map for disaster response and archaeology. For Keeping History Above Water conference, 2017 disastermap Demonstration map for disaster response and archaeology. For Keeping History Above Water conference, 2017. This data should not be used for official planning or decision making. Demonstration available at https://aejolene.github.io/disastermap/ Presentation details: Archaeology Disaster Response A demonstration map for Keeping History Above Water Conference, November 1, 2017...
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open-archaeo
software

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None Photogrammetry - Data Collection https://leadr-msu.github.io/photogrammetry-data-collection This tutorial was prepared by Jack A. Biggs and is maintained by LEADR staff. Here are the usage rights associated with this tutorial. Find all our tutorials at https://leadr-msu.github.io . To restore the repository download the bundle wget...
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open-archaeo
software

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Joint estimate of demography and contamination for nuclear ancient DNA Readme for DICE DICE is a Bayesian method to jointly estimate error rates, demographic parameters and the rate of contamination from present-day humans in ancient DNA (aDNA) samples from modern or archaic humans. Our approach is based on an MCMC sampler, and is applicable to nuclear autosomal aDNA data. It can also serve to infer the most probable ancestry of the individual(s) that contaminated the sample. Contact Fernando...
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open-archaeo
software

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:closed_book: Datasets for Teaching Archaeology and Palaeontology folio Datasets for teaching quantitative approaches and modeling inarchaeology and paleontology. This package provides several types ofdata related to broad topics (cultural evolution, radiocarbon dating,paleoenvironments, etc.), which can be used to illustrate statisticalmethods in the classroom (multivariate data analysis, compositional dataanalysis, diversity measurement, etc.). This package is for teaching purposes only: some...
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open-archaeo
software

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downloads and prepares shkr data for analysis shkrdata Package for downloading and preparing shkr data for archaeological analysis. The database contains archaeological information from the Early Iron Age in South-West Germany. This package is intended to simplify the data access as well as some basic steps of the preparation of the data. For this purpose shkrdata comprises function for accessing the data as well as function wrapping functionality from our package moin...
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open-archaeo
software

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R Shiny Document - Visualizing model functions in Neimans 'Stylistic variation in evolutionary perspective' with an interactive document The interactive document neiman1995.Rmd aims to visualize the model functions in Neiman, F. (1995). Stylistic Variation in Evolutionary Perspective: Inferences from Decorative Diversity and Interassemblage Distance in Illinois Woodland Ceramic Assemblages. American Antiquity, 60(1), 7-36. doi:10.2307/282074 For study and teaching purposes. To restore the...
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open-archaeo
software

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An R package that provides datasets useful for biological and forensic anthropology. In addition, it includes helper functions for working with dataframes. bioanth An R package that provides datasets useful for biological and forensic anthropology. In addition, it includes helper functions for working with dataframes. This package provides the following datasets: howell : Howells Craniometric Data Set howelltest : Howells Craniometric Test Data Set goldman : Goldman Osteometric Data Set Note:...
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open-archaeo
software

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A simple gui app to simplify scanning single context plans. To restore the repository download the bundle wget https://archive.org/download/github.com-lparchaeology-ArkScan_-_2015-07-28_08-06-46/lparchaeology-ArkScan_-_2015-07-28_08-06-46.bundle and run: git clone lparchaeology-ArkScan_-_2015-07-28_08-06-46.bundle Source: https://github.com/lparchaeology/ArkScan Uploader: lparchaeology Upload date: 2015-07-28
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open-archaeo
software

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Total Open Station downloads and exports survey data from your total station To restore the repository download the bundle wget https://archive.org/download/github.com-steko-totalopenstation_-_2020-11-18_11-12-29/steko-totalopenstation_-_2020-11-18_11-12-29.bundle and run: git clone steko-totalopenstation_-_2020-11-18_11-12-29.bundle Source: https://github.com/steko/totalopenstation Uploader: steko Upload date: 2020-11-18
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open-archaeo
software

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osl_calibration To restore the repository download the bundle wget https://archive.org/download/gist.github.com-5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04/5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04.bundle and run: git clone 5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04.bundle Source: https://gist.github.com/5f996a0f52ba1d92f76968119f941bd8 Uploader: benmarwick Upload date: 2016-05-10
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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How does wikipedia see archaeology? To restore the repository download the bundle wget https://archive.org/download/gist.github.com-0d5e6526604e755b556f_-_2015-09-22_16-54-45/0d5e6526604e755b556f_-_2015-09-22_16-54-45.bundle and run: git clone 0d5e6526604e755b556f_-_2015-09-22_16-54-45.bundle Source: https://gist.github.com/0d5e6526604e755b556f Uploader: benmarwick Upload date: 2015-09-22
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open-archaeo
software

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R Package - Download and Prepare C14 Dates from Different Source Databases c14bazAAR is an R package to query different openly accessible radiocarbon date databases. It allows basic data cleaning, calibration and merging. If you're not familiar with R other tools (such as GoGet ) to search for radiocarbon dates might be better suited for your needs. Installation How to use ( Download , Calibration , Material classification , Country attribution , Duplicates , Conversion , Technical functions ,...
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open-archaeo
software

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R package for quantitative ethnobotany ethnobotanyR The goal of ethnobotanyR is to provide an easy-to-use platform forethnobotanists to work with quantitative ethnobotany assessments. Itclosely follows Tardio and Pardo-de-Santayana(2008) and Whitney etal. (2018) . Users of ethnobotanyR may find it useful to read the background papersand books on ethnobotany theory. In particular Albuquerque etal. (2019) and Gaoue etal. (2017) offer helpfulguidance to understanding theoretical approaches in...
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open-archaeo
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.obj slicing for lithic 3d morphometrics To restore the repository download the bundle wget https://archive.org/download/github.com-kotdijian-lithic3dslicer_-_2019-06-23_01-39-40/kotdijian-lithic3dslicer_-_2019-06-23_01-39-40.bundle and run: git clone kotdijian-lithic3dslicer_-_2019-06-23_01-39-40.bundle Source: https://github.com/kotdijian/lithic3dslicer Uploader: kotdijian Upload date: 2019-06-23
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open-archaeo
software

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A simple algorithm to find local maxima/minima in sequential data findPeaks A repo for a function I posted as part of my answer to a quesiton about peak detection on StackExchange. The function takes an ordered sequence (vector) of values x and a number m and returns a vector of indices of local peaks in x . A (local) peak is defined as a point such that m points either side of it has a lower or equal value to it. Thus, m can be used adjust the sensitivity of the peak detection procedure:...
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open-archaeo
software

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An open source radiocarbon (14C) calibration software. Written in Python A radiocarbon calibration software DOI: https://doi.org/10.5281/zenodo.630455 IOSACal is the open source radiocarbon calibration software of the IOSA project. IOSACal includes: a programming library a web-based application a command-line program IOSACal is written in the Python programming language and it can runnatively on any platform where the Python interpreter is available,including all Linux distributions, MacOS X...
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open-archaeo
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A collection of time-stratigraphic publications Strativerse (source) This is the source of the Strativerse , as a Hugo site. Changes to this repository areautomatically synced to https://strativerse.org using Netlify . If you are interested in contributing, Isuggest opening anissue . Youcan browse the Strativerse at https://strativerse.org/ , or clone thisrepository, open in RStudio and use thehacked-together R toolbox to work with objects in tabular form. ``` r these functions are in the...
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open-archaeo
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A web app and mapping interface for searching and displaying bibliographic information about Anatolian archaeology Anatolia Bibliography Map of Archaeology The goal of this project is to spatially locate bibliographic resources (published articles, books) regarding the archaeology of Anatolia (modern Turkey). This takes the bibliography of archaeology to the next level by showing not only the topics and authors, but where the archaeological research is being done. Note: This web app was...
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open-archaeo
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R interface for PaleoClim paleoclimate data rpaleoclim: an R interface for PaleoClim paleoclimate data PaleoClim \ < http://paleoclim.org > is a database of free, highresolution paleoclimate surfaces covering the whole globe. It includesthe standard bioclimatic variables commonly used in ecologicalmodelling, downscaled from the HadCM3 general circulation model for keytime periods, at up to 2.5 minute spatial resolution. This package provides a simple interface for downloading PaleoClim...
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open-archaeo
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None To restore the repository download the bundle wget https://archive.org/download/github.com-Chronomodel-chronomodel_-_2021-02-02_16-41-52/Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle and run: git clone Chronomodel-chronomodel_-_2021-02-02_16-41-52.bundle Source: https://github.com/Chronomodel/chronomodel Uploader: Chronomodel Upload date: 2021-02-02
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open-archaeo
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None Iraq_mortar This application has three files: createTasks.py: for creating the application in PyBossa, and fill it with some tasks. template.html: the view for every task and deal with the data of the answers. tutorial.html: a simple tutorial for the volunteers. Funded Partners Testing the application You need to install the pybossa-client first (use a virtualenv and this needs boto): bash $ pip install -r requirements.txt $ cp s3_settings.py.tmpl s3_settings.py In the settings file, just...
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open-archaeo
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This R script produces a exploratory visual for assessing site date ranges originally suggested to me by Wesley Bernardini (Redlands University). The plot consits of horizontal bars on an x-axis reprenting time with the width determined based on the production span for that type and with the height of each box determined based on the relative frequency of that type with types sorted vertically by start date. The script reads in csv files in the formatted of the example dataset here and produces...
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open-archaeo
software

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Fluorescence fitting GUI. To restore the repository download the bundle wget https://archive.org/download/github.com-NSLS-II-PyXRF_-_2021-02-03_16-51-52/NSLS-II-PyXRF_-_2021-02-03_16-51-52.bundle and run: git clone NSLS-II-PyXRF_-_2021-02-03_16-51-52.bundle Source: https://github.com/NSLS-II/PyXRF Uploader: NSLS-II Upload date: 2021-02-03
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open-archaeo
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Skullanalyzer: a concrete way of extracting cranial morphometric features skullanalyzer a concrete way of extracting cranial mophometric features The skullanalyzer loads a 3D triangular mesh cranial model along with a number of user defined landmarks and extracts a set of cranial morphometric features, which can be used for further analyses. It requires two input files, one Alias Wavefront file (model name.obj) containing a triangular mesh of the cranial model to be analyzed and a Meshlab...
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open-archaeo
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None survey2gis It is a little tool that can process survey data, suchas produced by a GPS or total station, and export it as topologicallycleaned data fit for use in GIS. For more information, seehttp://survey-tools.org and the user manual that came withthis software. Important links Official Website: http://survey-tools.org.Bugtracker: https://github.com/survey2gis/survey-tools/issuesMailinglist: https://groups.io/g/survey2gis/topics FAQs How do I install this software? Look into the folder...
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open-archaeo
software

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Dynamic and static 3D plotting for vegan What is vegan3d? vegan3d is an R package of 3D plotting routines split apart from vegan . It can be used for dynamic plots based on rgl package,and for static 3D plots based on scatterplot3d package. The package contains the following functions: ordirgl with its support functions orglpoints , orgltext , orglsegments , orglellipse , orglspider , orglcluster and orglspantree . Theserequire rgl package and provide dynamic ordination graphics.See a simple...
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open-archaeo
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Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology AtlantGIS Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology. All AtlantGIS data are published under a CC-BY-SA 4.0 license. The idea is to create artificial data creatively referring to the story of Atlantis as told by Platon.We believe that simple datasets with a narrative are most qualified to impart knowledge and skills to...
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open-archaeo
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The Southwest Taphonomic Protocol swtp This repository contains the data and code for our paper: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). The Southwestern Taphonomic Protocol . In review. How to cite Please cite this compendium as: Bocinsky, R. Kyle, Tiffany Clark, and Katherine A. Spielmann, (2020). Compendium of R code and data for ‘The Southwestern Taphonomic Protocol’ . Accessed 10 Dec 2020. Contents The :file_folder: paper directory contains:...
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open-archaeo
software

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graphical interface for DRAC To restore the repository download the bundle wget https://archive.org/download/github.com-dstreble-shiny_DRAC_-_2016-11-02_16-04-27/dstreble-shiny_DRAC_-_2016-11-02_16-04-27.bundle and run: git clone dstreble-shiny_DRAC_-_2016-11-02_16-04-27.bundle Source: https://github.com/dstreble/shiny_DRAC Uploader: dstreble Upload date: 2016-11-02
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open-archaeo
software

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Allen relations from Bayesian calibration Function determine.allen.relation() Compare two indefinite intervals produced by a Bayesian calibration using the Allen algebra, display a graphical summary of the Allen relation set based on the Nökel lattice, optionally save the graphical summary to a file, and return a list containing the frequency of each basic relation in the Bayesian calibration, the Allen relation set, a statement whether or not the Allen relation set is concurrent, the basic...
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open-archaeo
software

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skyscapeR: an R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. skyscapeR skyscapeR is a open source R package for data reduction, visualization and analysis in skyscape archaeology, archaeoastronomy and cultural astronomy. It is intended to become a fully-fledged, transparent and peer-reviewed package offering a robust set of quantitative methods while retaining simplicity of use. For information on how to use skyscapeR...
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open-archaeo
software

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R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation bleiglas bleiglas is an R package that employs Voro++ for the calculation of threedimensional Voronoi diagrams from input point clouds. This is a specialform of tessellation where each polygon is defined as the area closestto one particular seed point. Voronoi diagrams have useful applicationsin - among others - astronomy, material science or geography andbleiglas provides functions to make 3D tessellation...
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open-archaeo
by benmarwick
software

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Plotting remote sensing data, especially how to go from XYZ data on an irregular grid to an interpolated raster To restore the repository download the bundle wget https://archive.org/download/gist.github.com-7331879_-_2015-12-27_20-29-23/7331879_-_2015-12-27_20-29-23.bundle and run: git clone 7331879_-_2015-12-27_20-29-23.bundle Source: https://gist.github.com/7331879 Uploader: benmarwick Upload date: 2015-12-27
Topics: Gist, GitHub, code, software, git
open-archaeo
software

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A QGIS plugin to simplfy digitization of archaeological plans drawn using the Museum of London Single Context Recording methodology. ARK Spatial A QGIS plugin for Archaeological Recording.Part of the Archaeological Recording Kit by L-P : Archaeologyhttp://ark.lparchaeology.com Installation Currently ARK Spatial must be manually installed via a Git clone and pb_tool. Clone the repository from GitHub: 'git clone https://github.com/lparchaeology/ArkPlan.git' Initialise the Git submodules: 'cd...
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open-archaeo
software

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Harris Matrix Visualization for the web using D3 + KLayJS-D3 Harris Matrix Visualization Converting Harris Matrix Composer XML The command line utility hmc2json.py , written in Python 3.5, will convert Harris Matrix Composer-style GraphML data to JSON Graph Format . Data exported from Harris Matrix Composer is packaged as a zip file with two XML documents: project.xml and matrix.xml . The latter contains the necessary graph data. ```sh$ unzip matrix.hmcx $ ./hmc2json.py matrix.xml matrix.json...
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open-archaeo
software

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iDAI.field | Archaeological Field Recording App by the German Archaeological Institute iDAI.field This is a monorepo containing three packages: iDAI.field Desktop : The iDAI.field desktop client based on AngularJS and Electron iDAI.field Mobile : The iDAI.field mobile client based on React Native iDAI.field Core : Shared TypeScript modules Development The repository uses lerna to manage sub-package dependecies.When first checking out the code base, bootstrap the dependencies with: $ npm run...
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open-archaeo
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Element Sourcing in R ElementSourcing Element Sourcing in R This R script is designed to source archaeological artifacts using elemental composition. It is primarily being designed to source obsidian, but I plan to adapt it for broader uses. To restore the repository download the bundle wget https://archive.org/download/github.com-bischrob-ElementSourcing_-_2018-02-06_20-35-44/bischrob-ElementSourcing_-_2018-02-06_20-35-44.bundle and run: git clone...
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open-archaeo
by scollinselliott
software

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Roman Peasant Project Small Finds Ontology Small Finds from Roman Peasant Project (2009-2014): Technical notes on a behavioral analysis of Roman sites in rural Tuscany. Information may also be found at https://volweb.utk.edu/~scolli46/rppsf.html . The code below depends on the following csv files which contain the semantic graph, as the original graph was composed in Gephi and exported: dataset.csv - table of small finds listed by site, phase, and definition, by count and weight. nodes.csv -...
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open-archaeo
software

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An R package that collects together data for the ancient world. Collected Ancient World data sets for R. Install with Sdevtools::install_github("sfsheath/cawd") See the 'data' directory for current list of R objects provided. And run data() in R to see the same but formatted. rmarkdown examples of using cawd See the inst/rmarkdown directory for source code. The following links are to rendered html files in the gh-pages branch of this repository....
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open-archaeo
software

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R and Stan code for fitting geographic models of artifact class diversity. Artifact Class Diversity This project contains R (www.r-project.org) and Stan (www.mc-stan.org) scripts that estimate artifact class diversity in multiple geographic regions. Point Diversity.R This script requires two csv files: geogdata.csv and point data.csv . The former csv file contains a row for every administrative unit under consideration (e.g., counties, states), with the first column consisting of unique...
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open-archaeo
software

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Bayesian Modeling of Archaeological Chronologies ArchaeoChron Bayesian Modeling of Archaeological Chronologies ArchaeoChron provides a list of functions for the Bayesian modeling of archaeological chronologies. The Bayesian models are implemented in 'JAGS' ('JAGS' stands for Just Another Gibbs Sampler. It is a program for the analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. See http://mcmc-jags.sourceforge.net/ and "JAGS Version 4.3.0 user...
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open-archaeo
by Big-Ancient-Mediterranean
software

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A tool for the geospatial analysis, literary network visualization, and plot mapping of ancient texts To restore the repository download the bundle wget https://archive.org/download/github.com-Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16/Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle and run: git clone Big-Ancient-Mediterranean-BAM_-_2018-09-16_12-29-16.bundle Source: https://github.com/Big-Ancient-Mediterranean/BAM Uploader: Big-Ancient-Mediterranean Upload date: 2018-09-16
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open-archaeo
software

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Interchange Tools for Multi-Parameter Spatiotemporal Data mudata2 The mudata2 package provides tools to read, write, and documentmulti-parameter spatiotemporal data. Installation You can install mudata2 from CRAN with: rinstall.packages("mudata2") Or alternatively, you can the development version from github with: ``` r install.packages("remotes") remotes::install_github("paleolimbot/mudata")``` What is mudata? The mudataformat is adata table in a specific form,...
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open-archaeo
software

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You have a sequence of numbered items and want to check if any are missing, which ones, how many gaps are found in the sequence, etc. missing You have a sequence of numbered items and want to check if any are missing,which ones, how many gaps are found in the sequence, etc. You're probably dealing with a museum inventory, an old paper log, anhistorical archive and you just can't get rid of those numbers (perhapsbecause there are cultural artifacts that have been marked with thosenumbers as...
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open-archaeo
software

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A web-based application to assist in geocoding of (mainly historical) datasets. Historical Geocoding Assistant Description The “Historical Geocoding Assistant” is an open-sourced browser-based application for assigning geographic coordinates in a more convenient and faster way than copy-pasting them from services such as Google Maps. The application was designed with historical projects in mind but is suitable for any geocoding work Essential Features works online with a live Google...
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open-archaeo
software

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Code repository of the book by Oliver Nakoinz and Daniel Knitter "Modelling Human Behaviour in Landscapes -- Basic concepts and modelling elements" mhbil Code repository of the book by Oliver Nakoinz and Daniel Knitter "Modelling Human Behaviour in Landscapes -- Basic concepts and modelling elements" published by Springer in 2016. You can get the book here: at Springer Worldcat link What will you find here? the code of the different chapters the data used within the book Why...
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open-archaeo
software

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An R package for the extraction, analysis and classification of (not only) archaeological objects from scanned images shapAAR This is an R package for the extraction, analysis and classification of (not only) archaeological objects derived from scanned images. Especially it aims at the analysis of the shapes/profiles of eg. ceramic vessels or arrow heads. Currently the extraction is implemented using active contour to identify and extract the shape informations. You can get an idea about its...
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open-archaeo
software

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None Introduction to Analysing Archaeological Radiocabon Ages Using R Ben Marwick, July 2020 Overview In this workshop we will practice some techniques for analysingarchaeological radiocabon ages using R. Here are the slides . Here’s the outline of keytopics: Calibrate and plot a single age Calibrate and plot multiple ages Combine and plot multiple ages using non-parametric phase estimation Age-depth modelling Summed probability density plots Hypothesis testing with SPDs You can download the...
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open-archaeo
software

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The R-script implements a means for statistically assessing the degree of co-occurrence between classes within a dataset based on an idea origially suggested by James Allison at BYU and published by Keith Kintigh in 2006. Binomial-Co-occurrence-Assessment The R-script implements a means for statistically assessing the degree of co-occurrence between classes within a dataset based on an idea origially suggested by James Allison at BYU and published by Keith Kintigh in 2006. I have implemented...
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open-archaeo
software

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Method for dating admixture in ancient DNA specimens DATES DATES (Distribution of Ancestry Tracts of Evolutionary Signals) is a method to estimate the time of admixture in ancient DNA samples described in Narasimhan, Patterson et al. 2018 Installation To make the DATES executable, you will need the following libraries: GSL 2.5 (https://www.gnu.org/software/gsl/)OpenBLAS 0.2.20 (www.openblas.net)FFTW 3.3.8 (http://www.fftw.org/download.html)````You will need to edit the file ``Makefile`` and...
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open-archaeo
software

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Manuals for total stations total-station-manuals Manuals for total stations To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-total-station-manuals_-_2020-04-18_22-50-09/steko-total-station-manuals_-_2020-04-18_22-50-09.bundle and run: git clone steko-total-station-manuals_-_2020-04-18_22-50-09.bundle Source: https://codeberg.org/steko/total-station-manuals Uploader: steko Upload date: 2020-04-18
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open-archaeo
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CRAN Task View: Archaeological Science CRAN Task View: Archaeological Science Maintainer: Ben Marwick Contact: benmarwick at gmail.com Version: 2020-12-26 This CRAN Task View contains a list of packages useful for scientific work in Archaeology, grouped by topic. Note that this is not an official CRAN Task View, just one I have prepared for my own convenience, so it includes some packages only on GitHub and other non-CRAN resources I find useful. Many of the most highly recommended packages...
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open-archaeo
software

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Bayesian reconstruction of ancient DNA fragments leeHom: Bayesian reconstruction of ancient DNA fragments QUESTIONS: gabriel [dot] reno [ at sign ] gmail.com About leeHom is a program for the Bayesian reconstruction of ancient DNA (the binary is mergeTrimReadsBAM). Downloading: Go to https://github.com/grenaud/leeHom and do one of the following: Clone the repository: git clone --recursive https://github.com/grenaud/leeHom.git Download the ZIP archive and then manually download the submodules...
Topics: GitHub, code, software, git
open-archaeo
software

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Southwest Asian Palaeoarchaeology Data S outh w est A sian P alaeoarchaeology Data A collection of archaeological datasets and tools related to the prehistory of Southwest Asia. Installation You can install the development version of swapdata from GitHub using the remotes package : rremotes::install_github("joeroe/swapdata") To restore the repository download the bundle wget...
Topics: GitHub, code, software, git
open-archaeo
software

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Dataset of 10,647 radiocarbon dates from the Near East from the Late Pleistocene until the Late Holocene (ca. 14 - 2 kya BP). NERD (Near East Radiocarbon Dates) Alessio Palmisano, Andrew Bevan, Dan Lawrence & Stephen Shennan The archive NERD provides a collation of 10,647 radiocarbon dates from 999 archaeological sites in the Near East from the Late Pleistocene until the Late Holocene (ca. 14 - 2 kya). These dates have been collected from existing online digital archives, and electronic and...
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open-archaeo
software

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A directory of GitHub projects by OR for archaeologists Archaeology @ GitHub This is a directory of GitHub projects by OR for archaeologists. Submit pull requests to add new projects. Of course, you can also submit links to git repos elsewhere, or to Mercurial repos, etc. The focus of this directory is not on the software per se , but rather on the fact that git is used to develop and share source code, literate programming resources, archaeological data, etc. Stuff seen at #caasiena (not...
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open-archaeo
software

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Importing Data from iDAI.field 2 into R idaifieldR idaifieldR imports data from the iDAI.field 2 database into R. The core functions of this package use sofa (available on CRAN) to connect to a running iDAI.field 2-client and store the whole database in a list in R (in memory), avoiding the csv-export that would otherwise be needed and gathering all documents at once, which is not possible with said csv-export. Any R-Script using idaifieldR to import the database can be re-run and updated with...
Topics: GitHub, code, software, git
open-archaeo
software

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Dédalo: Cultural Heritage & Oral History Management System To restore the repository download the bundle wget https://archive.org/download/github.com-renderpci-dedalo_-_2021-01-16_08-50-03/renderpci-dedalo_-_2021-01-16_08-50-03.bundle and run: git clone renderpci-dedalo_-_2021-01-16_08-50-03.bundle Source: https://github.com/renderpci/dedalo Uploader: renderpci Upload date: 2021-01-16
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open-archaeo
software

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A dataset and discussion relating to Roman amphitheaters Most recent draft release: Permanent DOI for link to all versions: https://doi.org/10.5281/zenodo.596149 roman-amphitheaters Edited by Sebastian Heath Table of Contents Introduction Diversity within the set A Network Approach to Density Introduction roman-amphitheaters is a dataset published in conjunction with figures and discussion that has the goal of facilitating the study of amphitheaters in the Roman world. For the purposes of this...
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open-archaeo
software

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INSIGHT has written several tools for Paolo Cignoni's Meshlab; these tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Meshlab Tools for Epigraphers These tools are meant to help you render orthographic views of 3D models for archaeological publication by simplifying, segmenting, cleaning and rendering 3D meshes. Before producing final plates for publication from 3D models, we find it...
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open-archaeo
software

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None AuthentiCT is a command-line tool to estimate the proportion of present-day DNA contamination in ancient DNA datasets generated from single-stranded libraries.It estimates contamination using an ancient DNA damage model and assumes that the contaminant is not deaminated. Installation: AuthentiCT requires Python 3.6+ and relies on a number of non-standard libraries. Here is the list of these dependencies with the versions that we used:- numpy (version 1.17.3)- numdifftools (version 0.9.39)-...
Topics: GitHub, code, software, git